Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20753 | 5' | -51.8 | NC_004688.1 | + | 18309 | 0.66 | 0.969014 |
Target: 5'- gGUAGAgGaCCGACUCC--AGCAUgggguucuUGGCg -3' miRNA: 3'- -UAUCUgU-GGCUGAGGcgUCGUA--------AUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 90298 | 0.66 | 0.965713 |
Target: 5'- -cGGGCACCGGgUCCG-GGUAUuucucgacaaUGGCu -3' miRNA: 3'- uaUCUGUGGCUgAGGCgUCGUA----------AUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 81824 | 0.66 | 0.962172 |
Target: 5'- uUGGAUugCGGCaaggUCCGCcauGGCGU-AGCc -3' miRNA: 3'- uAUCUGugGCUG----AGGCG---UCGUAaUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 48389 | 0.66 | 0.962172 |
Target: 5'- cUGGACAUCGccaacCUCUGgAGCGgcgGGCa -3' miRNA: 3'- uAUCUGUGGCu----GAGGCgUCGUaa-UCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 13184 | 0.66 | 0.958384 |
Target: 5'- uGUAGAUGCCGcCgUCCGCgAGCugguugUAGUa -3' miRNA: 3'- -UAUCUGUGGCuG-AGGCG-UCGua----AUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 5357 | 0.66 | 0.958384 |
Target: 5'- uGUGGGCACCGG-UCCGCGGguccacGCu -3' miRNA: 3'- -UAUCUGUGGCUgAGGCGUCguaau-CG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 61801 | 0.66 | 0.958384 |
Target: 5'- -cGGAgCugCGGgUCCaGCGGCcgUAGUg -3' miRNA: 3'- uaUCU-GugGCUgAGG-CGUCGuaAUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 53250 | 0.66 | 0.954345 |
Target: 5'- -gAGGCGCagGugUCgcucgccacggCGCGGUAUUGGCg -3' miRNA: 3'- uaUCUGUGg-CugAG-----------GCGUCGUAAUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 9643 | 0.66 | 0.954345 |
Target: 5'- -cAGACucuUCGGCuUCCGCAGCGUc--- -3' miRNA: 3'- uaUCUGu--GGCUG-AGGCGUCGUAaucg -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 29151 | 0.66 | 0.950048 |
Target: 5'- -cGGGCACCGuGgUCuCGUGGCAUU-GCa -3' miRNA: 3'- uaUCUGUGGC-UgAG-GCGUCGUAAuCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 39875 | 0.67 | 0.94549 |
Target: 5'- --cGGCGCCuGCUCCGCcgGGUccggUGGCg -3' miRNA: 3'- uauCUGUGGcUGAGGCG--UCGua--AUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 46843 | 0.67 | 0.930218 |
Target: 5'- -gAGGCGCaCGGC-CCGCAGUucucGCa -3' miRNA: 3'- uaUCUGUG-GCUGaGGCGUCGuaauCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 55816 | 0.67 | 0.930218 |
Target: 5'- gGUGGGCGCCgcGAC-CgGCGGC--UAGCg -3' miRNA: 3'- -UAUCUGUGG--CUGaGgCGUCGuaAUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 41597 | 0.67 | 0.924589 |
Target: 5'- gGUGGaACGCCaguuucgCCGCuGCGUUGGCg -3' miRNA: 3'- -UAUC-UGUGGcuga---GGCGuCGUAAUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 59263 | 0.68 | 0.918689 |
Target: 5'- --cGACACCG-UUgUGCGGCAUgAGCc -3' miRNA: 3'- uauCUGUGGCuGAgGCGUCGUAaUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 39341 | 0.68 | 0.912521 |
Target: 5'- --cGuCACCGcccGCUCCGCcguagcgacgAGCAUUAGUc -3' miRNA: 3'- uauCuGUGGC---UGAGGCG----------UCGUAAUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 62957 | 0.68 | 0.906084 |
Target: 5'- -gAGAuCACCGcguGCUCCGCGGUugaGGUa -3' miRNA: 3'- uaUCU-GUGGC---UGAGGCGUCGuaaUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 47343 | 0.68 | 0.906084 |
Target: 5'- cGUGGGCGCCG---CCGCAGCcgaAGCc -3' miRNA: 3'- -UAUCUGUGGCugaGGCGUCGuaaUCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 26081 | 0.68 | 0.899383 |
Target: 5'- gGUAGAcCACCGccagccgcaccGC-CCGCAGCAccgggGGCa -3' miRNA: 3'- -UAUCU-GUGGC-----------UGaGGCGUCGUaa---UCG- -5' |
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20753 | 5' | -51.8 | NC_004688.1 | + | 16552 | 0.68 | 0.892419 |
Target: 5'- --cGGCACCaaGCUUCGCAGCG--GGCc -3' miRNA: 3'- uauCUGUGGc-UGAGGCGUCGUaaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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