miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20755 5' -53.7 NC_004688.1 + 46989 0.66 0.945851
Target:  5'- gCUCCCAccacgcCUCGCCCAcgaaGGCUAaacCGGUggCCa -3'
miRNA:   3'- -GAGGGUu-----GAGUGGGU----UUGGU---GCCA--GG- -5'
20755 5' -53.7 NC_004688.1 + 16463 0.66 0.945851
Target:  5'- uUCCCGAC--ACCCAAGCUACaagcgCCg -3'
miRNA:   3'- gAGGGUUGagUGGGUUUGGUGcca--GG- -5'
20755 5' -53.7 NC_004688.1 + 25508 0.66 0.945851
Target:  5'- -aCCCAccGC-CACCCAuuCCGgGGauUCCu -3'
miRNA:   3'- gaGGGU--UGaGUGGGUuuGGUgCC--AGG- -5'
20755 5' -53.7 NC_004688.1 + 78738 0.66 0.944484
Target:  5'- -cCCCAgaucggcuucggcgGCUCGCCCGAAUCAaacaUCCa -3'
miRNA:   3'- gaGGGU--------------UGAGUGGGUUUGGUgcc-AGG- -5'
20755 5' -53.7 NC_004688.1 + 25697 0.66 0.941208
Target:  5'- gUCCCGAUUCGCCgAuggcguacGCCACGaucgCCu -3'
miRNA:   3'- gAGGGUUGAGUGGgUu-------UGGUGCca--GG- -5'
20755 5' -53.7 NC_004688.1 + 6340 0.66 0.941208
Target:  5'- uCUCCUcggucuGGCgauaACCCAGGCCGgGGUUg -3'
miRNA:   3'- -GAGGG------UUGag--UGGGUUUGGUgCCAGg -5'
20755 5' -53.7 NC_004688.1 + 17097 0.66 0.941208
Target:  5'- -gCCCGGCUCugcgaCCAGcAUCGCGG-CCu -3'
miRNA:   3'- gaGGGUUGAGug---GGUU-UGGUGCCaGG- -5'
20755 5' -53.7 NC_004688.1 + 27230 0.66 0.941208
Target:  5'- -aCCCAggugaGCUUGCCCGGAuucuCCG-GGUCCc -3'
miRNA:   3'- gaGGGU-----UGAGUGGGUUU----GGUgCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 58812 0.66 0.941208
Target:  5'- gUCgCCGGCgccggggccaUCGCCaccACCGCGGUCUc -3'
miRNA:   3'- gAG-GGUUG----------AGUGGguuUGGUGCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 14737 0.66 0.941208
Target:  5'- aUCCCccGCgaCACCCAAGaaggcuCCGCGG-CCg -3'
miRNA:   3'- gAGGGu-UGa-GUGGGUUU------GGUGCCaGG- -5'
20755 5' -53.7 NC_004688.1 + 3569 0.66 0.936314
Target:  5'- gUCCCAGUUCAUCa----CugGGUCCa -3'
miRNA:   3'- gAGGGUUGAGUGGguuugGugCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 82043 0.66 0.936314
Target:  5'- uCUCCgGuUUCACCCAGuuCUugGGgCCg -3'
miRNA:   3'- -GAGGgUuGAGUGGGUUu-GGugCCaGG- -5'
20755 5' -53.7 NC_004688.1 + 21072 0.66 0.933257
Target:  5'- aCUUCCAGCUCGCCgAAGaggugacgccgaaaCGCGGaUCg -3'
miRNA:   3'- -GAGGGUUGAGUGGgUUUg-------------GUGCC-AGg -5'
20755 5' -53.7 NC_004688.1 + 61702 0.66 0.929575
Target:  5'- gUCCCGucgauaagaccaccGCUCAgCCCAGGCCuGCGcG-CCa -3'
miRNA:   3'- gAGGGU--------------UGAGU-GGGUUUGG-UGC-CaGG- -5'
20755 5' -53.7 NC_004688.1 + 3300 0.66 0.925769
Target:  5'- uUCUCAAC-CACCCAGGggGCGGUg- -3'
miRNA:   3'- gAGGGUUGaGUGGGUUUggUGCCAgg -5'
20755 5' -53.7 NC_004688.1 + 58482 0.67 0.920117
Target:  5'- -gCCCAGCUCGgCCAGAUgGCcGcCCu -3'
miRNA:   3'- gaGGGUUGAGUgGGUUUGgUGcCaGG- -5'
20755 5' -53.7 NC_004688.1 + 27898 0.67 0.920117
Target:  5'- uUCCgGGCgaACCCGucGCCGUGGUCCu -3'
miRNA:   3'- gAGGgUUGagUGGGUu-UGGUGCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 16993 0.67 0.920117
Target:  5'- -gCCCA---UACCCAGuccgGCCGCGGUgCg -3'
miRNA:   3'- gaGGGUugaGUGGGUU----UGGUGCCAgG- -5'
20755 5' -53.7 NC_004688.1 + 32364 0.67 0.914213
Target:  5'- aCUCCCccgacAGCUCcuuaCCGGGCCACGccaaguucgcGUCCu -3'
miRNA:   3'- -GAGGG-----UUGAGug--GGUUUGGUGC----------CAGG- -5'
20755 5' -53.7 NC_004688.1 + 46323 0.67 0.914213
Target:  5'- -gCCCAcGCUC-CCCGAGaccgccacguUCACGGUCg -3'
miRNA:   3'- gaGGGU-UGAGuGGGUUU----------GGUGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.