miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20756 5' -56.8 NC_004688.1 + 109436 0.66 0.863469
Target:  5'- gUCGGCUCGC--CCGUGGgCGUcgauCGCc -3'
miRNA:   3'- gGGUCGAGCGuuGGCGCUgGCAu---GCG- -5'
20756 5' -56.8 NC_004688.1 + 67344 0.66 0.863469
Target:  5'- cCCCAGCUCaucCAAUCGgCG-UCGUGguCGCa -3'
miRNA:   3'- -GGGUCGAGc--GUUGGC-GCuGGCAU--GCG- -5'
20756 5' -56.8 NC_004688.1 + 32335 0.66 0.863469
Target:  5'- gCCaAGUUCGCGuCCugGgGGgCGUACGCg -3'
miRNA:   3'- gGG-UCGAGCGUuGG--CgCUgGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 28448 0.66 0.860427
Target:  5'- gCCgGGCccgUCGCugaagaagaacguGCCGgGGCCGUACa- -3'
miRNA:   3'- -GGgUCG---AGCGu------------UGGCgCUGGCAUGcg -5'
20756 5' -56.8 NC_004688.1 + 6611 0.66 0.858123
Target:  5'- uCCguGCcggCGUAACCgaccuccacguggauGCGGCCGUcggugcaGCGCu -3'
miRNA:   3'- -GGguCGa--GCGUUGG---------------CGCUGGCA-------UGCG- -5'
20756 5' -56.8 NC_004688.1 + 18271 0.66 0.855801
Target:  5'- cCCCAGCU-GCGguccacgagGCC-CGACCa-GCGCa -3'
miRNA:   3'- -GGGUCGAgCGU---------UGGcGCUGGcaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 14829 0.66 0.855801
Target:  5'- gCCCGGCggcauuaaaccUCGCGACUG-GGCC-UGcCGCa -3'
miRNA:   3'- -GGGUCG-----------AGCGUUGGCgCUGGcAU-GCG- -5'
20756 5' -56.8 NC_004688.1 + 25171 0.66 0.855801
Target:  5'- gUCCAGCgcgcCGUuuCCGUGcucGCCGUacuggucggGCGCg -3'
miRNA:   3'- -GGGUCGa---GCGuuGGCGC---UGGCA---------UGCG- -5'
20756 5' -56.8 NC_004688.1 + 10650 0.66 0.84793
Target:  5'- gUCAGCgcggCGUuguCCGCGGCCuGgauCGCg -3'
miRNA:   3'- gGGUCGa---GCGuu-GGCGCUGG-Cau-GCG- -5'
20756 5' -56.8 NC_004688.1 + 20990 0.66 0.84793
Target:  5'- gUCCAGgUCGC-GCCGUcAUCGUugGa -3'
miRNA:   3'- -GGGUCgAGCGuUGGCGcUGGCAugCg -5'
20756 5' -56.8 NC_004688.1 + 85281 0.66 0.84793
Target:  5'- cCUCGGCcuccCGCAGCCugaugGCGGCCa-GCGCc -3'
miRNA:   3'- -GGGUCGa---GCGUUGG-----CGCUGGcaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 36362 0.66 0.84793
Target:  5'- gUCCAGUUCGauACCGaaCGACC--GCGCa -3'
miRNA:   3'- -GGGUCGAGCguUGGC--GCUGGcaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 51969 0.66 0.839864
Target:  5'- gCCCuuCUCGCuGCCGCcGCUGcUGCGg -3'
miRNA:   3'- -GGGucGAGCGuUGGCGcUGGC-AUGCg -5'
20756 5' -56.8 NC_004688.1 + 30944 0.66 0.839864
Target:  5'- cUCCAGCUUGUauuugGACgGCaGGCCGggccCGCc -3'
miRNA:   3'- -GGGUCGAGCG-----UUGgCG-CUGGCau--GCG- -5'
20756 5' -56.8 NC_004688.1 + 24238 0.66 0.839864
Target:  5'- uUCgGGUUCcaGCGACgGCGuCCGUcGCGCc -3'
miRNA:   3'- -GGgUCGAG--CGUUGgCGCuGGCA-UGCG- -5'
20756 5' -56.8 NC_004688.1 + 89885 0.66 0.839864
Target:  5'- -gCGGCUCGCcGCC-UGGCCGgggucCGCu -3'
miRNA:   3'- ggGUCGAGCGuUGGcGCUGGCau---GCG- -5'
20756 5' -56.8 NC_004688.1 + 61790 0.66 0.832442
Target:  5'- gUCCAGCggccguagugcacgaCGCAgaaGCCGCGAgCGUGgugcuucuucuCGCa -3'
miRNA:   3'- -GGGUCGa--------------GCGU---UGGCGCUgGCAU-----------GCG- -5'
20756 5' -56.8 NC_004688.1 + 49141 0.66 0.831608
Target:  5'- ---cGC-CGC-GCCGCGGCCG-ACGUg -3'
miRNA:   3'- ggguCGaGCGuUGGCGCUGGCaUGCG- -5'
20756 5' -56.8 NC_004688.1 + 55842 0.66 0.831608
Target:  5'- uCCgCAGCagUCGUggUCGUGAUCGagguggGCGCc -3'
miRNA:   3'- -GG-GUCG--AGCGuuGGCGCUGGCa-----UGCG- -5'
20756 5' -56.8 NC_004688.1 + 102276 0.66 0.831608
Target:  5'- aCCCAGCUUgGCuauGCCGa-AUgGUugGCg -3'
miRNA:   3'- -GGGUCGAG-CGu--UGGCgcUGgCAugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.