miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20796 5' -55.8 NC_004689.1 + 51435 0.66 0.783538
Target:  5'- aACGG-AUCGGGugCGcccaagGCGUACCGGCg -3'
miRNA:   3'- -UGUUgUGGCUCugGU------UGCGUGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 60808 0.66 0.783538
Target:  5'- ---uCGCCGGGAUCaAAUGCAacuaCGGUCa -3'
miRNA:   3'- uguuGUGGCUCUGG-UUGCGUg---GCCGG- -5'
20796 5' -55.8 NC_004689.1 + 41519 0.66 0.783538
Target:  5'- -gGGCACCGGGuaCAugGCGuCCaGCCa -3'
miRNA:   3'- ugUUGUGGCUCugGUugCGU-GGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 29688 0.66 0.773806
Target:  5'- uCggUACCGGaACCGuacugaguUGCACCGGCa -3'
miRNA:   3'- uGuuGUGGCUcUGGUu-------GCGUGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 31477 0.66 0.773806
Target:  5'- cCAugGCCGcGAUUguuCGCACCaucGGCCa -3'
miRNA:   3'- uGUugUGGCuCUGGuu-GCGUGG---CCGG- -5'
20796 5' -55.8 NC_004689.1 + 23900 0.66 0.773806
Target:  5'- cCAGCGCCGAcguGCCuuCGC-UCGGCa -3'
miRNA:   3'- uGUUGUGGCUc--UGGuuGCGuGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 58501 0.66 0.763936
Target:  5'- gACGGCAuuUCGAG-CUuGCGCACC-GCCu -3'
miRNA:   3'- -UGUUGU--GGCUCuGGuUGCGUGGcCGG- -5'
20796 5' -55.8 NC_004689.1 + 20164 0.66 0.763936
Target:  5'- uACAGCGCCGA--CCAguuuccACGCgacgACCaGGCCc -3'
miRNA:   3'- -UGUUGUGGCUcuGGU------UGCG----UGG-CCGG- -5'
20796 5' -55.8 NC_004689.1 + 38136 0.66 0.753936
Target:  5'- uCAACA-CGGGACCGAgGacuGCCGGUa -3'
miRNA:   3'- uGUUGUgGCUCUGGUUgCg--UGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 16834 0.66 0.75293
Target:  5'- cCAGCAgCGGGuaGCCGACGCcacugacGCUGGUg -3'
miRNA:   3'- uGUUGUgGCUC--UGGUUGCG-------UGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 29805 0.66 0.747879
Target:  5'- cCGGCACCGGGAguuccaccguuggcaCCAggACGacCACCGGUa -3'
miRNA:   3'- uGUUGUGGCUCU---------------GGU--UGC--GUGGCCGg -5'
20796 5' -55.8 NC_004689.1 + 13340 0.66 0.743819
Target:  5'- -gAACugCGcGGACUccgGugGCucACCGGCCu -3'
miRNA:   3'- ugUUGugGC-UCUGG---UugCG--UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 21686 0.66 0.743819
Target:  5'- gGCuGCACaGGGACCGugGCagGCgGuGCCg -3'
miRNA:   3'- -UGuUGUGgCUCUGGUugCG--UGgC-CGG- -5'
20796 5' -55.8 NC_004689.1 + 30166 0.66 0.743819
Target:  5'- cCGGCACCGcuggcguuGGCUAugGCAaCGGCg -3'
miRNA:   3'- uGUUGUGGCu-------CUGGUugCGUgGCCGg -5'
20796 5' -55.8 NC_004689.1 + 21478 0.66 0.743819
Target:  5'- cCAGCACa-GGAauuUCGACGCcCUGGCCg -3'
miRNA:   3'- uGUUGUGgcUCU---GGUUGCGuGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 31884 0.66 0.743819
Target:  5'- ---cCACCGGGGCCcACuugcccugugcgGCuCCGGCCc -3'
miRNA:   3'- uguuGUGGCUCUGGuUG------------CGuGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 63967 0.67 0.737697
Target:  5'- uCGGCACUGGGACCcucgucggguaucucGAccacCGCACCGGg- -3'
miRNA:   3'- uGUUGUGGCUCUGG---------------UU----GCGUGGCCgg -5'
20796 5' -55.8 NC_004689.1 + 21029 0.67 0.733594
Target:  5'- aGCAA-GCCcAGACCuucaAGCGCgagcuugagACCGGCCa -3'
miRNA:   3'- -UGUUgUGGcUCUGG----UUGCG---------UGGCCGG- -5'
20796 5' -55.8 NC_004689.1 + 21369 0.67 0.733594
Target:  5'- gACAACGCCGGGgaucgcGCCAACuugACCGaCCa -3'
miRNA:   3'- -UGUUGUGGCUC------UGGUUGcg-UGGCcGG- -5'
20796 5' -55.8 NC_004689.1 + 18623 0.67 0.723273
Target:  5'- aACuGCGCCGucagcauggacaGGAUgGACGCGguacccCCGGCCc -3'
miRNA:   3'- -UGuUGUGGC------------UCUGgUUGCGU------GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.