miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20875 5' -54.4 NC_004689.1 + 54344 0.66 0.850019
Target:  5'- aUGCGCGAUUgcaUCACGCgACGguagucuucUGCCg -3'
miRNA:   3'- aGCGCGCUAA---GGUGCG-UGCau-------ACGGg -5'
20875 5' -54.4 NC_004689.1 + 37120 0.66 0.849182
Target:  5'- cCGCGUGGUgagcacaucCCACGCcuucgcggucuucGCGggaaccuUGCCCg -3'
miRNA:   3'- aGCGCGCUAa--------GGUGCG-------------UGCau-----ACGGG- -5'
20875 5' -54.4 NC_004689.1 + 43676 0.66 0.841554
Target:  5'- gCGCcguauucaucaGCGAgUCCACcCACGggccguaAUGCCCg -3'
miRNA:   3'- aGCG-----------CGCUaAGGUGcGUGCa------UACGGG- -5'
20875 5' -54.4 NC_004689.1 + 36231 0.66 0.831999
Target:  5'- aUCGCGCGcAUUacgcgaucguuuaUCGCGCACGUuaAUGUa- -3'
miRNA:   3'- -AGCGCGC-UAA-------------GGUGCGUGCA--UACGgg -5'
20875 5' -54.4 NC_004689.1 + 38527 0.66 0.823997
Target:  5'- -aGCcCGGUUCCGCGUAUccaacGCCCa -3'
miRNA:   3'- agCGcGCUAAGGUGCGUGcaua-CGGG- -5'
20875 5' -54.4 NC_004689.1 + 12515 0.66 0.823997
Target:  5'- -aGCGCGGUguugCCcgacCGCACGUaAUGCg- -3'
miRNA:   3'- agCGCGCUAa---GGu---GCGUGCA-UACGgg -5'
20875 5' -54.4 NC_004689.1 + 40850 0.66 0.823997
Target:  5'- -aGUGCGAUcUUCACGUugcCGUcgaGUGCCUg -3'
miRNA:   3'- agCGCGCUA-AGGUGCGu--GCA---UACGGG- -5'
20875 5' -54.4 NC_004689.1 + 60967 0.66 0.823997
Target:  5'- gUCGUGgccuCGGUguacccccacUCCgGCGCugGUGcUGCCCa -3'
miRNA:   3'- -AGCGC----GCUA----------AGG-UGCGugCAU-ACGGG- -5'
20875 5' -54.4 NC_004689.1 + 1766 0.66 0.814923
Target:  5'- cCGCGUccGGUgaacagcuucUUCACGCgaGCGUucGUGCCCu -3'
miRNA:   3'- aGCGCG--CUA----------AGGUGCG--UGCA--UACGGG- -5'
20875 5' -54.4 NC_004689.1 + 37470 0.67 0.805664
Target:  5'- gCGUGCGGccaUACGCGCGcaAUGCCg -3'
miRNA:   3'- aGCGCGCUaagGUGCGUGCa-UACGGg -5'
20875 5' -54.4 NC_004689.1 + 11454 0.67 0.805664
Target:  5'- cUGCGCcaccGAgaaccgCCGCGCccugaGCGUugAUGCCCa -3'
miRNA:   3'- aGCGCG----CUaa----GGUGCG-----UGCA--UACGGG- -5'
20875 5' -54.4 NC_004689.1 + 15869 0.67 0.766977
Target:  5'- aCGCGC--UUUC-CGCugGUAUccgGCCCa -3'
miRNA:   3'- aGCGCGcuAAGGuGCGugCAUA---CGGG- -5'
20875 5' -54.4 NC_004689.1 + 64006 0.68 0.74679
Target:  5'- aUGCGCGcacccuGUUCCACGCA-GUAgGCgCg -3'
miRNA:   3'- aGCGCGC------UAAGGUGCGUgCAUaCGgG- -5'
20875 5' -54.4 NC_004689.1 + 36450 0.68 0.742696
Target:  5'- cUCGCGCGuggaaucgcaUCCGCGCACGcagggaaucgcGCCUu -3'
miRNA:   3'- -AGCGCGCua--------AGGUGCGUGCaua--------CGGG- -5'
20875 5' -54.4 NC_004689.1 + 8697 0.68 0.726155
Target:  5'- gUCGUa-GAUUCgACGCgaACGUAUGCgCCg -3'
miRNA:   3'- -AGCGcgCUAAGgUGCG--UGCAUACG-GG- -5'
20875 5' -54.4 NC_004689.1 + 39690 0.68 0.726155
Target:  5'- cCGUGuCGAUUUCGUGCGCGaucAUGUCCa -3'
miRNA:   3'- aGCGC-GCUAAGGUGCGUGCa--UACGGG- -5'
20875 5' -54.4 NC_004689.1 + 63121 0.68 0.715696
Target:  5'- cUGCGCGcAUUCCAUGCGaaucgagccUGUuUGCCg -3'
miRNA:   3'- aGCGCGC-UAAGGUGCGU---------GCAuACGGg -5'
20875 5' -54.4 NC_004689.1 + 38592 0.68 0.715696
Target:  5'- uUCGUuuuGCGucUUCACGCGCGUccaccaacUGCCCa -3'
miRNA:   3'- -AGCG---CGCuaAGGUGCGUGCAu-------ACGGG- -5'
20875 5' -54.4 NC_004689.1 + 40088 0.68 0.705158
Target:  5'- cUUGCGCGucuUUCCgAUGCGCuGaAUGUCCg -3'
miRNA:   3'- -AGCGCGCu--AAGG-UGCGUG-CaUACGGG- -5'
20875 5' -54.4 NC_004689.1 + 37686 0.68 0.701983
Target:  5'- cUCGgGCGGcgUCCACcugucgcgcauuguGCcuACGUGUGCUCa -3'
miRNA:   3'- -AGCgCGCUa-AGGUG--------------CG--UGCAUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.