Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21040 | 3' | -52.6 | NC_004745.1 | + | 19899 | 0.66 | 0.673052 |
Target: 5'- -gGCCaguuuUGAgaaaAACCGGCucGGUacuGCCCAGCa -3' miRNA: 3'- agUGG-----ACUa---UUGGCCG--CUA---UGGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 27333 | 0.66 | 0.673052 |
Target: 5'- aUCACCUGuAUGgucauguuGCUGGCGcUGCaCgAGCu -3' miRNA: 3'- -AGUGGAC-UAU--------UGGCCGCuAUG-GgUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 22640 | 0.66 | 0.684626 |
Target: 5'- -aGCCUGAcacucUGACCGGUGuuuCCguGUa -3' miRNA: 3'- agUGGACU-----AUUGGCCGCuauGGguCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 8901 | 0.66 | 0.696145 |
Target: 5'- cCAUCgggcgGGUGACCGGC----UCCGGCg -3' miRNA: 3'- aGUGGa----CUAUUGGCCGcuauGGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 8767 | 0.66 | 0.707593 |
Target: 5'- -aGCCUGAUgcuGACCGaGCGAacgcUGgUCAGUg -3' miRNA: 3'- agUGGACUA---UUGGC-CGCU----AUgGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 8079 | 0.66 | 0.707593 |
Target: 5'- gUCugCUGuucACUGGCGAcguuauucgcccUGUCCAGCg -3' miRNA: 3'- -AGugGACuauUGGCCGCU------------AUGGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 9262 | 0.66 | 0.718958 |
Target: 5'- ---aCUGAUGcacACUGGCGAUuuUCGGCg -3' miRNA: 3'- agugGACUAU---UGGCCGCUAugGGUCG- -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 4168 | 0.66 | 0.718958 |
Target: 5'- uUCACCguugAACCGuCGGUcACCCAGa -3' miRNA: 3'- -AGUGGacuaUUGGCcGCUA-UGGGUCg -5' |
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21040 | 3' | -52.6 | NC_004745.1 | + | 10203 | 0.66 | 0.718958 |
Target: 5'- aUCACCcgUGAgccGACCGGUG-UGCgCAGg -3' miRNA: 3'- -AGUGG--ACUa--UUGGCCGCuAUGgGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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