Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 5574 | 0.69 | 0.51956 |
|
Target: 5'- cCACCUccucGGUGAacauguaCGGCGGggugcggcgguguuUACCCGGCa -3' miRNA: 3'- aGUGGA----CUAUUg------GCCGCU--------------AUGGGUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 5423 | 0.7 | 0.468199 |
|
Target: 5'- gCGUCUGGauACCGGCGAUAUugCCGGUg -3' miRNA: 3'- aGUGGACUauUGGCCGCUAUG--GGUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 4883 | 0.7 | 0.475689 |
|
Target: 5'- gCAUC-GGUAaccuGCCGGCGGUAcgcgucccguacuuCCCGGCg -3' miRNA: 3'- aGUGGaCUAU----UGGCCGCUAU--------------GGGUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 4313 | 0.67 | 0.649785 |
|
Target: 5'- cCACCgacaccGCCGGUGGcACCgAGCg -3' miRNA: 3'- aGUGGacuau-UGGCCGCUaUGGgUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 4168 | 0.66 | 0.718958 |
|
Target: 5'- uUCACCguugAACCGuCGGUcACCCAGa -3' miRNA: 3'- -AGUGGacuaUUGGCcGCUA-UGGGUCg -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 3524 | 0.7 | 0.446103 |
|
Target: 5'- gUUAUCUGGUGggGCUGGCcgucaccGAUgACCCGGCa -3' miRNA: 3'- -AGUGGACUAU--UGGCCG-------CUA-UGGGUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 1749 | 0.69 | 0.545498 |
|
Target: 5'- -uGCgUGGUAcuggcaccGCCGGUGGUGgCCGGUg -3' miRNA: 3'- agUGgACUAU--------UGGCCGCUAUgGGUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 1685 | 0.69 | 0.534165 |
|
Target: 5'- cCACCggccaccACCGGCGGUGCC-AGUa -3' miRNA: 3'- aGUGGacuau--UGGCCGCUAUGGgUCG- -5' |
|||||||
| 21040 | 3' | -52.6 | NC_004745.1 | + | 845 | 0.68 | 0.603127 |
|
Target: 5'- cCAgUCUGAUGaccuuACCGGUGGUGCUgUAGCg -3' miRNA: 3'- aGU-GGACUAU-----UGGCCGCUAUGG-GUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home