miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21057 5' -43.2 NC_004745.1 + 7263 0.66 0.997749
Target:  5'- aGCuGCUGAUA-GCGAC-CGGAGgccguggauuuuUCACCg -3'
miRNA:   3'- -CG-CGACUAUaUGUUGcGUUUU------------AGUGG- -5'
21057 5' -43.2 NC_004745.1 + 21821 0.66 0.997241
Target:  5'- uGCcCUGGUAUGCAAaGgGAAAUuUACCg -3'
miRNA:   3'- -CGcGACUAUAUGUUgCgUUUUA-GUGG- -5'
21057 5' -43.2 NC_004745.1 + 18855 0.66 0.99664
Target:  5'- uGCGCUGGUcu----UGCGAAAUC-CCu -3'
miRNA:   3'- -CGCGACUAuauguuGCGUUUUAGuGG- -5'
21057 5' -43.2 NC_004745.1 + 5366 0.66 0.99664
Target:  5'- cGUGCUGGa--GCAGgGCAAAGgugCACa -3'
miRNA:   3'- -CGCGACUauaUGUUgCGUUUUa--GUGg -5'
21057 5' -43.2 NC_004745.1 + 7070 0.66 0.99664
Target:  5'- cCGCUGAcGaaaaaccggggcUAUGACGUGAuAGUCACCg -3'
miRNA:   3'- cGCGACUaU------------AUGUUGCGUU-UUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 26284 0.66 0.99664
Target:  5'- uGCGCUGAUGUAUccaggaaacuuAACGaUAAAAggaGCUg -3'
miRNA:   3'- -CGCGACUAUAUG-----------UUGC-GUUUUag-UGG- -5'
21057 5' -43.2 NC_004745.1 + 17923 0.66 0.99664
Target:  5'- aGCaCUGGU-UGCAGCGUAAAGcUC-CCa -3'
miRNA:   3'- -CGcGACUAuAUGUUGCGUUUU-AGuGG- -5'
21057 5' -43.2 NC_004745.1 + 21839 0.66 0.99664
Target:  5'- -aGCcGAUAUACAcCGuCAGGAcagCGCCa -3'
miRNA:   3'- cgCGaCUAUAUGUuGC-GUUUUa--GUGG- -5'
21057 5' -43.2 NC_004745.1 + 23686 0.67 0.995116
Target:  5'- uGUGCUGGUuuuaGCGugGCAAcuUCcguCCa -3'
miRNA:   3'- -CGCGACUAua--UGUugCGUUuuAGu--GG- -5'
21057 5' -43.2 NC_004745.1 + 19722 0.67 0.995116
Target:  5'- gGCGCUGc---AUGAUGCAaAAAUCACa -3'
miRNA:   3'- -CGCGACuauaUGUUGCGU-UUUAGUGg -5'
21057 5' -43.2 NC_004745.1 + 21489 0.67 0.994063
Target:  5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3'
miRNA:   3'- -CGCGA-------------CUAUaUGUUgCGUUUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 7333 0.67 0.993073
Target:  5'- uGCGCUGGaugACAuccgggcgggACGCAuugAGcgCGCCa -3'
miRNA:   3'- -CGCGACUauaUGU----------UGCGU---UUuaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 5689 0.68 0.991821
Target:  5'- aCGCUGGUgAUGCcgcaggGGCGCuGGcgCACCu -3'
miRNA:   3'- cGCGACUA-UAUG------UUGCGuUUuaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 9748 0.68 0.991821
Target:  5'- cCGCcGAcgcagACGGCGCGGGguuAUCGCCg -3'
miRNA:   3'- cGCGaCUaua--UGUUGCGUUU---UAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 11557 0.68 0.991821
Target:  5'- uCGCgGAUA-ACGGCGCGuuuuGUCGCUu -3'
miRNA:   3'- cGCGaCUAUaUGUUGCGUuu--UAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 28147 0.68 0.990397
Target:  5'- gGUGCUGcgggGUAUAuCGCGAAAUaCAUCu -3'
miRNA:   3'- -CGCGACua--UAUGUuGCGUUUUA-GUGG- -5'
21057 5' -43.2 NC_004745.1 + 4619 0.68 0.990397
Target:  5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3'
miRNA:   3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 22568 0.68 0.986971
Target:  5'- cGUGCUGAUAUuu-ACaCGGAAaCACCg -3'
miRNA:   3'- -CGCGACUAUAuguUGcGUUUUaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 21636 0.68 0.984938
Target:  5'- aUGCUGAUGcuCGACaGCAGGgauAUUACCg -3'
miRNA:   3'- cGCGACUAUauGUUG-CGUUU---UAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 6855 0.69 0.982672
Target:  5'- uGCGCccGAUAaACAGaCGCGGGGugauggguUCACCa -3'
miRNA:   3'- -CGCGa-CUAUaUGUU-GCGUUUU--------AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.