Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21185 | 5' | -56 | NC_004778.3 | + | 109466 | 0.66 | 0.907435 |
Target: 5'- aCgUGCCCgaaaagcgagGUCGGCGcuGACGCAcgUCACu -3' miRNA: 3'- -GgACGGG----------CGGCCGC--UUGUGUa-AGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 32261 | 0.66 | 0.903715 |
Target: 5'- uCCUGCCaaccgcgcacgcugGCCGGCG-GCGCcgUguCGg -3' miRNA: 3'- -GGACGGg-------------CGGCCGCuUGUGuaAguGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 113144 | 0.66 | 0.901188 |
Target: 5'- gCCgacGCCUGCCGGC----ACGUUUACa -3' miRNA: 3'- -GGa--CGGGCGGCCGcuugUGUAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 114931 | 0.66 | 0.901188 |
Target: 5'- --cGCaaGCCGGCGuGCGCAc-CGCGg -3' miRNA: 3'- ggaCGggCGGCCGCuUGUGUaaGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 60150 | 0.66 | 0.901188 |
Target: 5'- -gUGCUgGCCGGCGAAUcgugGUUCAUu -3' miRNA: 3'- ggACGGgCGGCCGCUUGug--UAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 35137 | 0.66 | 0.894708 |
Target: 5'- gCUG-CUGCCGGCcGACGCAaauugCGCGu -3' miRNA: 3'- gGACgGGCGGCCGcUUGUGUaa---GUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 7908 | 0.66 | 0.894708 |
Target: 5'- gUUGCUgGCCGGCG-GCGCuuaccUCACc -3' miRNA: 3'- gGACGGgCGGCCGCuUGUGua---AGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 94834 | 0.66 | 0.894708 |
Target: 5'- aCUGCaacgUGCCGGUGGguuGCGCGccgCACGg -3' miRNA: 3'- gGACGg---GCGGCCGCU---UGUGUaa-GUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 41238 | 0.66 | 0.887998 |
Target: 5'- --gGCCgCGCCGGCaaccccauuaucGAAguCAUUCGCa -3' miRNA: 3'- ggaCGG-GCGGCCG------------CUUguGUAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 91174 | 0.66 | 0.887998 |
Target: 5'- aCCU--CCGUCgGGCGcuCGCGUUCACGc -3' miRNA: 3'- -GGAcgGGCGG-CCGCuuGUGUAAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 5136 | 0.66 | 0.881062 |
Target: 5'- gCCgUGCCCacGCCGGCGccGCGC-UUCAg- -3' miRNA: 3'- -GG-ACGGG--CGGCCGCu-UGUGuAAGUgc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 72235 | 0.66 | 0.881062 |
Target: 5'- --aGCuCCGUCGGCaAGCACcaAUUCGCa -3' miRNA: 3'- ggaCG-GGCGGCCGcUUGUG--UAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 96596 | 0.66 | 0.873906 |
Target: 5'- cCCUGCUagccaGCgCGGCGGcCGCuagCGCGa -3' miRNA: 3'- -GGACGGg----CG-GCCGCUuGUGuaaGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 9479 | 0.66 | 0.873906 |
Target: 5'- cUCUGCCUGCgCGuCGucACACAggUUCACGu -3' miRNA: 3'- -GGACGGGCG-GCcGCu-UGUGU--AAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 93438 | 0.67 | 0.866532 |
Target: 5'- gUUGCCCGCCGuGCGGugccaucccaACGaGUUgACGg -3' miRNA: 3'- gGACGGGCGGC-CGCU----------UGUgUAAgUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 44317 | 0.67 | 0.866532 |
Target: 5'- -aUGCCCGCCaGCGAcgaGCGgcgcCGCGa -3' miRNA: 3'- ggACGGGCGGcCGCUug-UGUaa--GUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 9560 | 0.67 | 0.866532 |
Target: 5'- --cGCCgCGCCGGCcGAAaaaGCcguuaaGUUCACGg -3' miRNA: 3'- ggaCGG-GCGGCCG-CUUg--UG------UAAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 40509 | 0.67 | 0.866532 |
Target: 5'- uCUUGCggcgcuucgaCGCCGGCGcguCGCAUUCAUu -3' miRNA: 3'- -GGACGg---------GCGGCCGCuu-GUGUAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 35760 | 0.67 | 0.858948 |
Target: 5'- --cGCCCgaGCUGGCGGACAacuugGUUgGCGg -3' miRNA: 3'- ggaCGGG--CGGCCGCUUGUg----UAAgUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 4046 | 0.67 | 0.858948 |
Target: 5'- -gUGUUCGCCGGCGGGCAgGccgaGCGc -3' miRNA: 3'- ggACGGGCGGCCGCUUGUgUaag-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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