miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 74318 0.66 0.990455
Target:  5'- ---cUCGCGCugauaccuuacGACGUGcGCCAAaaacacgcGCACCg -3'
miRNA:   3'- caaaGGCGCG-----------CUGCAC-UGGUU--------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 10745 0.66 0.990455
Target:  5'- --cUCCGCGgGcugcCGUGugC--GCGCCg -3'
miRNA:   3'- caaAGGCGCgCu---GCACugGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 63689 0.66 0.990455
Target:  5'- ---aCCGCcCGGCucgcUGcGCCAAACGCCg -3'
miRNA:   3'- caaaGGCGcGCUGc---AC-UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 40759 0.66 0.990455
Target:  5'- ---gCUGCGCGGCGacaucccGuCCAAuuGCGCCa -3'
miRNA:   3'- caaaGGCGCGCUGCa------CuGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65968 0.66 0.990327
Target:  5'- ---cCCGCGCcgaagaaGGCGcuuucGCCGAACGCCc -3'
miRNA:   3'- caaaGGCGCG-------CUGCac---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95181 0.66 0.989109
Target:  5'- --aUgCGCGCGugcuccuugaACaUGGCCGAACACUu -3'
miRNA:   3'- caaAgGCGCGC----------UGcACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 118053 0.66 0.989109
Target:  5'- --aUuuGCGCcuuGCGUG-CCAAGCugCc -3'
miRNA:   3'- caaAggCGCGc--UGCACuGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 15390 0.66 0.989109
Target:  5'- ---gCCGCGCGGCcaaccuaaaGACCAAAgACg -3'
miRNA:   3'- caaaGGCGCGCUGca-------CUGGUUUgUGg -5'
21186 3' -51.3 NC_004778.3 + 121620 0.66 0.988966
Target:  5'- ----gCGCGCGGuccacgcCGUcGGCCGAGCGCa -3'
miRNA:   3'- caaagGCGCGCU-------GCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 17108 0.66 0.987619
Target:  5'- --gUgCGCGCGGCGcGccuACCGuggcAACGCCg -3'
miRNA:   3'- caaAgGCGCGCUGCaC---UGGU----UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 34216 0.66 0.987619
Target:  5'- --gUCCGCgGCGAUuUGGuuGAACACg -3'
miRNA:   3'- caaAGGCG-CGCUGcACUggUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 61785 0.66 0.987619
Target:  5'- -gUUCUGCGCG-CGUcgcuggugGGCCAAcCACa -3'
miRNA:   3'- caAAGGCGCGCuGCA--------CUGGUUuGUGg -5'
21186 3' -51.3 NC_004778.3 + 118777 0.66 0.985976
Target:  5'- -cUUCgGgCGCGGCGcGGCCGGcgcGCACa -3'
miRNA:   3'- caAAGgC-GCGCUGCaCUGGUU---UGUGg -5'
21186 3' -51.3 NC_004778.3 + 32975 0.66 0.985976
Target:  5'- ---gCCGCGuCGACGUGugUAcguuuGCGuCCu -3'
miRNA:   3'- caaaGGCGC-GCUGCACugGUu----UGU-GG- -5'
21186 3' -51.3 NC_004778.3 + 13417 0.66 0.985976
Target:  5'- aUUUCCGCcCGuuUGUGGCacAGCACCa -3'
miRNA:   3'- cAAAGGCGcGCu-GCACUGguUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 46550 0.66 0.985976
Target:  5'- ----aCGUGCGuCGUGcacGCCGuACACCu -3'
miRNA:   3'- caaagGCGCGCuGCAC---UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 57056 0.66 0.985976
Target:  5'- -gUUCgGUGUcACGcUGACCAGgaauGCGCCg -3'
miRNA:   3'- caAAGgCGCGcUGC-ACUGGUU----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 92975 0.66 0.985976
Target:  5'- -----aGCGCGugGUGGcgcCCAccACACCg -3'
miRNA:   3'- caaaggCGCGCugCACU---GGUu-UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 127208 0.66 0.985976
Target:  5'- --gUCCGCG-GGCGUGACguuucugucgauCAGcucgcGCACCc -3'
miRNA:   3'- caaAGGCGCgCUGCACUG------------GUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 14283 0.66 0.984172
Target:  5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3'
miRNA:   3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.