miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 13271 0.66 0.989059
Target:  5'- -gGUC-GUAAUC-CCUCGCCAGc-GCa -3'
miRNA:   3'- cgCAGcCGUUAGuGGAGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 68339 0.66 0.989059
Target:  5'- ---aUGGUAAUCACgUCGgCAgGUUGCa -3'
miRNA:   3'- cgcaGCCGUUAGUGgAGCgGU-UAACG- -5'
21189 3' -51.3 NC_004778.3 + 56925 0.66 0.989059
Target:  5'- uCGUCGGCGucCGCgUCGUCGAc-GCu -3'
miRNA:   3'- cGCAGCCGUuaGUGgAGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 34455 0.66 0.989059
Target:  5'- cGCG-CGGaaaGAaCGCCUCGUCGAacaGCg -3'
miRNA:   3'- -CGCaGCCg--UUaGUGGAGCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 71970 0.66 0.989059
Target:  5'- cGCG-CGGCAGcggCAgCUUGCCcag-GCa -3'
miRNA:   3'- -CGCaGCCGUUa--GUgGAGCGGuuaaCG- -5'
21189 3' -51.3 NC_004778.3 + 14491 0.66 0.989059
Target:  5'- aGCGUCaaucauGGCAAagGCCgcggugcgcaCGCCGGcUUGCg -3'
miRNA:   3'- -CGCAG------CCGUUagUGGa---------GCGGUU-AACG- -5'
21189 3' -51.3 NC_004778.3 + 97175 0.66 0.987556
Target:  5'- gGCGUUGGCg--CugCUCuuuguggaGCUGAUUGUa -3'
miRNA:   3'- -CGCAGCCGuuaGugGAG--------CGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 128603 0.66 0.987397
Target:  5'- uUGUCGGCGGgcauaccucCGCCUCcgccuccgccuccGCCGccGUUGCu -3'
miRNA:   3'- cGCAGCCGUUa--------GUGGAG-------------CGGU--UAACG- -5'
21189 3' -51.3 NC_004778.3 + 128522 0.66 0.987397
Target:  5'- uUGUCGGCGGgcauaccucCGCCUCcgccuccgccuccGCCGccGUUGCu -3'
miRNA:   3'- cGCAGCCGUUa--------GUGGAG-------------CGGU--UAACG- -5'
21189 3' -51.3 NC_004778.3 + 10232 0.66 0.985898
Target:  5'- gGCGgCGaGCAGguguuuagugCGCagcgCGCCGAUUGCg -3'
miRNA:   3'- -CGCaGC-CGUUa---------GUGga--GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 8480 0.66 0.985898
Target:  5'- aGCGggcgCGGCccgCGCCcCGCCAGUc-- -3'
miRNA:   3'- -CGCa---GCCGuuaGUGGaGCGGUUAacg -5'
21189 3' -51.3 NC_004778.3 + 34938 0.66 0.984076
Target:  5'- cGCGgCGGCGucGUUAUUgUGCCAacGUUGCa -3'
miRNA:   3'- -CGCaGCCGU--UAGUGGaGCGGU--UAACG- -5'
21189 3' -51.3 NC_004778.3 + 22427 0.66 0.984076
Target:  5'- cGCGUCGGCAucaaacaaGCCUUggaauaugacgGCCGGUcUGUc -3'
miRNA:   3'- -CGCAGCCGUuag-----UGGAG-----------CGGUUA-ACG- -5'
21189 3' -51.3 NC_004778.3 + 90548 0.66 0.984076
Target:  5'- aGCGUCGGaUAGUgGCagcgCUCGCCGccgaGCg -3'
miRNA:   3'- -CGCAGCC-GUUAgUG----GAGCGGUuaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 72923 0.66 0.984076
Target:  5'- aCGUUGGCGAUUAaCUCacGCCAAgcuaGCg -3'
miRNA:   3'- cGCAGCCGUUAGUgGAG--CGGUUaa--CG- -5'
21189 3' -51.3 NC_004778.3 + 71253 0.66 0.982081
Target:  5'- gGUGUCGGCGAagGCgUUGgCGAggGUg -3'
miRNA:   3'- -CGCAGCCGUUagUGgAGCgGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 128461 0.66 0.982081
Target:  5'- uGCGUCGuCGAgcaUGCCUCcGCC-GUUGCu -3'
miRNA:   3'- -CGCAGCcGUUa--GUGGAG-CGGuUAACG- -5'
21189 3' -51.3 NC_004778.3 + 31246 0.66 0.982081
Target:  5'- cCGUgGcGCGcgCACCUCgcGCCGAgaaacUUGCg -3'
miRNA:   3'- cGCAgC-CGUuaGUGGAG--CGGUU-----AACG- -5'
21189 3' -51.3 NC_004778.3 + 95779 0.66 0.982081
Target:  5'- cGCG-CGGCAGcgCGCCg-GCCGcgcUGCg -3'
miRNA:   3'- -CGCaGCCGUUa-GUGGagCGGUua-ACG- -5'
21189 3' -51.3 NC_004778.3 + 16068 0.66 0.982081
Target:  5'- uGUGUcCGGCAAgcccgCGCgUCGCCAc---- -3'
miRNA:   3'- -CGCA-GCCGUUa----GUGgAGCGGUuaacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.