miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 96534 0.66 0.853691
Target:  5'- cGCGUCUgcgggcgUGCAc-GCGCCGUgcaCGG-CCa -3'
miRNA:   3'- -CGCGGAa------ACGUuaCGCGGCG---GCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 90013 0.66 0.845744
Target:  5'- -aGUCg--GCAAaGCGgCGCCGGUgCu -3'
miRNA:   3'- cgCGGaaaCGUUaCGCgGCGGCCAgG- -5'
21190 3' -56.8 NC_004778.3 + 19280 0.66 0.844938
Target:  5'- uGCGCCUUUaguuugucguacgGCAGcugcacUGUGCCguauacggaccgGCCGGUgCCc -3'
miRNA:   3'- -CGCGGAAA-------------CGUU------ACGCGG------------CGGCCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 109111 0.66 0.845744
Target:  5'- uCGaCCcgUGCGuUGUGCCGCCgauGGUgCCg -3'
miRNA:   3'- cGC-GGaaACGUuACGCGGCGG---CCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 114073 0.66 0.837601
Target:  5'- aGCGUCggcgaaaGCGGUGUcuuGCUGCCGcguGUCCa -3'
miRNA:   3'- -CGCGGaaa----CGUUACG---CGGCGGC---CAGG- -5'
21190 3' -56.8 NC_004778.3 + 24237 0.67 0.794226
Target:  5'- -aGCUUgUGCGAcgGCGCCGCguuuGUCCa -3'
miRNA:   3'- cgCGGAaACGUUa-CGCGGCGgc--CAGG- -5'
21190 3' -56.8 NC_004778.3 + 72426 0.67 0.81557
Target:  5'- uGCGCCacaaagUGUAGgcgGCaaacucgccuggcccGCCGCacaGGUCCa -3'
miRNA:   3'- -CGCGGaa----ACGUUa--CG---------------CGGCGg--CCAGG- -5'
21190 3' -56.8 NC_004778.3 + 93621 0.67 0.812077
Target:  5'- gGCGCUUguugGUGcgGCGCCggGUCGGgcagCCg -3'
miRNA:   3'- -CGCGGAaa--CGUuaCGCGG--CGGCCa---GG- -5'
21190 3' -56.8 NC_004778.3 + 79834 0.67 0.803229
Target:  5'- aGCGCCc---CAGUGCGCuCGCaCGG-CUa -3'
miRNA:   3'- -CGCGGaaacGUUACGCG-GCG-GCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 4270 0.67 0.775786
Target:  5'- cGCGCCUcuucgaaGCGAauaauUGCGUCGgCCGGUg- -3'
miRNA:   3'- -CGCGGAaa-----CGUU-----ACGCGGC-GGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 34483 0.67 0.785075
Target:  5'- cGCGUCUcgGaCcGUGCGCgGCCGG-Ca -3'
miRNA:   3'- -CGCGGAaaC-GuUACGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 10575 0.67 0.785075
Target:  5'- uUGuCCUcagUUGC-GUGCGCgCGCCGuGUCUg -3'
miRNA:   3'- cGC-GGA---AACGuUACGCG-GCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 92731 0.67 0.82076
Target:  5'- gGCGCCg--GCGGUGCGCgucuuggcgaGCgCGGUg- -3'
miRNA:   3'- -CGCGGaaaCGUUACGCGg---------CG-GCCAgg -5'
21190 3' -56.8 NC_004778.3 + 1509 0.67 0.812077
Target:  5'- uUGCCcc-GCGggGCGCUGCCgaGGUCg -3'
miRNA:   3'- cGCGGaaaCGUuaCGCGGCGG--CCAGg -5'
21190 3' -56.8 NC_004778.3 + 58174 0.67 0.812077
Target:  5'- uCGCCgccGC----CGCCGCCGuGUCCg -3'
miRNA:   3'- cGCGGaaaCGuuacGCGGCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 95016 0.67 0.803229
Target:  5'- uGCGCCgacggGCAgGUGCGCCuggaccaccCCGG-CCu -3'
miRNA:   3'- -CGCGGaaa--CGU-UACGCGGc--------GGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 8706 0.67 0.797845
Target:  5'- cGCGCCgggUUaCGGuuuggccgagaacuuUGaCGCCGCCGGcgCCg -3'
miRNA:   3'- -CGCGGa--AAcGUU---------------AC-GCGGCGGCCa-GG- -5'
21190 3' -56.8 NC_004778.3 + 118774 0.67 0.794226
Target:  5'- aCGCUUcggGCGcgGCGCgGCCGG-Cg -3'
miRNA:   3'- cGCGGAaa-CGUuaCGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 45325 0.67 0.775786
Target:  5'- cCGCUgugUGCGcu-CGCCGCCGGUg- -3'
miRNA:   3'- cGCGGaa-ACGUuacGCGGCGGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 121429 0.67 0.775786
Target:  5'- cGCGUCg--GCcGUGuCGCCGCCGucggcgCCg -3'
miRNA:   3'- -CGCGGaaaCGuUAC-GCGGCGGCca----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.