Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 25269 | 0.66 | 0.853691 |
Target: 5'- aGCGCauaaucuccaCUUUGCAAaacGCGCagcgcacuucguCGCCGcGUCCc -3' miRNA: 3'- -CGCG----------GAAACGUUa--CGCG------------GCGGC-CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 33558 | 0.66 | 0.853691 |
Target: 5'- uGCGUaagUGCGucuauuUGCGCacCGCUGGUCa -3' miRNA: 3'- -CGCGgaaACGUu-----ACGCG--GCGGCCAGg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 31244 | 0.66 | 0.861436 |
Target: 5'- uUGUCcUUGUug-GCGUCGCCGGUgugCCu -3' miRNA: 3'- cGCGGaAACGuuaCGCGGCGGCCA---GG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 61286 | 0.66 | 0.861436 |
Target: 5'- cGCGCUa---CGAUGCGCCGUCG--CCg -3' miRNA: 3'- -CGCGGaaacGUUACGCGGCGGCcaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 95277 | 0.66 | 0.861436 |
Target: 5'- aUGCUgc-GCAGcuUGuCGCCGCCGGcgaCCg -3' miRNA: 3'- cGCGGaaaCGUU--AC-GCGGCGGCCa--GG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 117677 | 0.66 | 0.861436 |
Target: 5'- gGCGUgc-UGCuGUGCGCCGuggaCCGG-CCg -3' miRNA: 3'- -CGCGgaaACGuUACGCGGC----GGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 43988 | 0.66 | 0.837601 |
Target: 5'- cGCGCCgcc-CAAcGCGCgGCCGG-Cg -3' miRNA: 3'- -CGCGGaaacGUUaCGCGgCGGCCaGg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 81734 | 0.66 | 0.861436 |
Target: 5'- gGCGCC--UGCGAUauccgGCGCgGCgGGUg- -3' miRNA: 3'- -CGCGGaaACGUUA-----CGCGgCGgCCAgg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 2448 | 0.66 | 0.861436 |
Target: 5'- -gGCCcgagUGCGGcaCGCCGCUGGUUa -3' miRNA: 3'- cgCGGaa--ACGUUacGCGGCGGCCAGg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 63431 | 0.66 | 0.860671 |
Target: 5'- gGCGaCg--GCGAUGCGUCGCCaaauucuGGcCCu -3' miRNA: 3'- -CGCgGaaaCGUUACGCGGCGG-------CCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 108416 | 0.66 | 0.856814 |
Target: 5'- uUGCCgcgGCGcagguggacgcgcugGUGCGCCGCgGG-CUg -3' miRNA: 3'- cGCGGaaaCGU---------------UACGCGGCGgCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 115284 | 0.66 | 0.864477 |
Target: 5'- uCGCauugUUUGCuAUGCGCCgaaaaaauugaggcgGCCGG-CCg -3' miRNA: 3'- cGCGg---AAACGuUACGCGG---------------CGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 85281 | 0.66 | 0.845744 |
Target: 5'- cGCGUCcaUGCcGU-CGCCGCCGcaaacgcccgcGUCCa -3' miRNA: 3'- -CGCGGaaACGuUAcGCGGCGGC-----------CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 92969 | 0.66 | 0.837601 |
Target: 5'- cGUGCUUacGCAuguuuGUGCaacgacaaagucGCCGCCGG-CCg -3' miRNA: 3'- -CGCGGAaaCGU-----UACG------------CGGCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 4050 | 0.66 | 0.829271 |
Target: 5'- uCGCCggcggGCAGgccgaGCGCCuGCCugaugGGUCCc -3' miRNA: 3'- cGCGGaaa--CGUUa----CGCGG-CGG-----CCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 57466 | 0.66 | 0.837601 |
Target: 5'- uGUGCCUggGCAA-GCuGCCGCUG--CCg -3' miRNA: 3'- -CGCGGAaaCGUUaCG-CGGCGGCcaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 100600 | 0.66 | 0.829271 |
Target: 5'- uUGCCcgUUUGCAGU-UGuaGCUGGUCCa -3' miRNA: 3'- cGCGG--AAACGUUAcGCggCGGCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 1826 | 0.66 | 0.829271 |
Target: 5'- cGCGCCUgcgGCGggGUuCCacacCUGGUCCa -3' miRNA: 3'- -CGCGGAaa-CGUuaCGcGGc---GGCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 8469 | 0.66 | 0.868974 |
Target: 5'- gGCGCCgggGCAGcggGCGCgGCCcGcgCCc -3' miRNA: 3'- -CGCGGaaaCGUUa--CGCGgCGGcCa-GG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 97314 | 0.66 | 0.861436 |
Target: 5'- aGCGCCgucgUGCAG-GCGCUGaaGGa-- -3' miRNA: 3'- -CGCGGaa--ACGUUaCGCGGCggCCagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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