miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 118774 0.67 0.794226
Target:  5'- aCGCUUcggGCGcgGCGCgGCCGG-Cg -3'
miRNA:   3'- cGCGGAaa-CGUuaCGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 90454 0.69 0.707662
Target:  5'- -gGCCUggcUUGCuAcgGCGCCGCCGuGaUCa -3'
miRNA:   3'- cgCGGA---AACG-UuaCGCGGCGGC-C-AGg -5'
21190 3' -56.8 NC_004778.3 + 115994 0.69 0.707662
Target:  5'- uGUGUgUUaGCGG-GCGCCGCCGGg-- -3'
miRNA:   3'- -CGCGgAAaCGUUaCGCGGCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 45602 0.69 0.717662
Target:  5'- cGCGCCUUcUGCAuagccGCGCCcucgucGCCGG-Cg -3'
miRNA:   3'- -CGCGGAA-ACGUua---CGCGG------CGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 116746 0.69 0.717662
Target:  5'- uCGCCaaaGCu---CGCCGCCGGUCg -3'
miRNA:   3'- cGCGGaaaCGuuacGCGGCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 95763 0.68 0.733504
Target:  5'- cGCGCCgggcgcuauccGCGcgGCaGCgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaa--------CGUuaCG-CG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 4270 0.67 0.775786
Target:  5'- cGCGCCUcuucgaaGCGAauaauUGCGUCGgCCGGUg- -3'
miRNA:   3'- -CGCGGAaa-----CGUU-----ACGCGGC-GGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 121429 0.67 0.775786
Target:  5'- cGCGUCg--GCcGUGuCGCCGCCGucggcgCCg -3'
miRNA:   3'- -CGCGGaaaCGuUAC-GCGGCGGCca----GG- -5'
21190 3' -56.8 NC_004778.3 + 45325 0.67 0.775786
Target:  5'- cCGCUgugUGCGcu-CGCCGCCGGUg- -3'
miRNA:   3'- cGCGGaa-ACGUuacGCGGCGGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 81773 0.69 0.707662
Target:  5'- uGCGCCgguaggUGCGcgGC-CUGCCGGg-- -3'
miRNA:   3'- -CGCGGaa----ACGUuaCGcGGCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 112507 0.69 0.697599
Target:  5'- -aGCCggUGCAuGUGCGCCGCguaaCGGcUCg -3'
miRNA:   3'- cgCGGaaACGU-UACGCGGCG----GCC-AGg -5'
21190 3' -56.8 NC_004778.3 + 97402 0.69 0.677315
Target:  5'- gGCGgCgc-GCAAggaaGCCGCCGGUUCu -3'
miRNA:   3'- -CGCgGaaaCGUUacg-CGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 113894 0.75 0.387176
Target:  5'- cGCGUCgg-GCGAaggcgGCGCCGCgGGUUCc -3'
miRNA:   3'- -CGCGGaaaCGUUa----CGCGGCGgCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 112206 0.74 0.404161
Target:  5'- gGCGCCcucgcGCAuaGCgGCCGCgCGGUCCa -3'
miRNA:   3'- -CGCGGaaa--CGUuaCG-CGGCG-GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 121522 0.74 0.430501
Target:  5'- cGCGCUaaagGUGAgguaaGCGCCGCCGG-CCa -3'
miRNA:   3'- -CGCGGaaa-CGUUa----CGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 110112 0.72 0.495633
Target:  5'- cGCGCCga-GCGcuUGgGCaccgGCCGGUCCg -3'
miRNA:   3'- -CGCGGaaaCGUu-ACgCGg---CGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 32132 0.71 0.554789
Target:  5'- aGCGCCUgcacgacgGCGcuccaAUGCGCCG-CGG-CCa -3'
miRNA:   3'- -CGCGGAaa------CGU-----UACGCGGCgGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 51278 0.71 0.595364
Target:  5'- uGCGUCUUUGCuggacAUGCGCCcgaGGUCg -3'
miRNA:   3'- -CGCGGAAACGu----UACGCGGcggCCAGg -5'
21190 3' -56.8 NC_004778.3 + 25457 0.71 0.595364
Target:  5'- cUGCaac-GCAGUGCGCCuuGCCGGUUUg -3'
miRNA:   3'- cGCGgaaaCGUUACGCGG--CGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 7347 0.7 0.646631
Target:  5'- aGCGCacaagGUccgAAUGCGCgUGCCGGUCg -3'
miRNA:   3'- -CGCGgaaa-CG---UUACGCG-GCGGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.