miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 8469 0.66 0.868974
Target:  5'- gGCGCCgggGCAGcggGCGCgGCCcGcgCCc -3'
miRNA:   3'- -CGCGGaaaCGUUa--CGCGgCGGcCa-GG- -5'
21190 3' -56.8 NC_004778.3 + 10575 0.67 0.785075
Target:  5'- uUGuCCUcagUUGC-GUGCGCgCGCCGuGUCUg -3'
miRNA:   3'- cGC-GGA---AACGuUACGCG-GCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 5065 0.67 0.785075
Target:  5'- aCGCCaacaccccCGucaGcCGCCGCCGGUCCg -3'
miRNA:   3'- cGCGGaaac----GUua-C-GCGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 119163 1.13 0.001147
Target:  5'- aGCGCCUUUGCAAUGCGCCGCCGGUCCc -3'
miRNA:   3'- -CGCGGAAACGUUACGCGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 31244 0.66 0.861436
Target:  5'- uUGUCcUUGUug-GCGUCGCCGGUgugCCu -3'
miRNA:   3'- cGCGGaAACGuuaCGCGGCGGCCA---GG- -5'
21190 3' -56.8 NC_004778.3 + 33558 0.66 0.853691
Target:  5'- uGCGUaagUGCGucuauuUGCGCacCGCUGGUCa -3'
miRNA:   3'- -CGCGgaaACGUu-----ACGCG--GCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 109111 0.66 0.845744
Target:  5'- uCGaCCcgUGCGuUGUGCCGCCgauGGUgCCg -3'
miRNA:   3'- cGC-GGaaACGUuACGCGGCGG---CCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 90013 0.66 0.845744
Target:  5'- -aGUCg--GCAAaGCGgCGCCGGUgCu -3'
miRNA:   3'- cgCGGaaaCGUUaCGCgGCGGCCAgG- -5'
21190 3' -56.8 NC_004778.3 + 92731 0.67 0.82076
Target:  5'- gGCGCCg--GCGGUGCGCgucuuggcgaGCgCGGUg- -3'
miRNA:   3'- -CGCGGaaaCGUUACGCGg---------CG-GCCAgg -5'
21190 3' -56.8 NC_004778.3 + 34483 0.67 0.785075
Target:  5'- cGCGUCUcgGaCcGUGCGCgGCCGG-Ca -3'
miRNA:   3'- -CGCGGAaaC-GuUACGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 93621 0.67 0.812077
Target:  5'- gGCGCUUguugGUGcgGCGCCggGUCGGgcagCCg -3'
miRNA:   3'- -CGCGGAaa--CGUuaCGCGG--CGGCCa---GG- -5'
21190 3' -56.8 NC_004778.3 + 114073 0.66 0.837601
Target:  5'- aGCGUCggcgaaaGCGGUGUcuuGCUGCCGcguGUCCa -3'
miRNA:   3'- -CGCGGaaa----CGUUACG---CGGCGGC---CAGG- -5'
21190 3' -56.8 NC_004778.3 + 95277 0.66 0.861436
Target:  5'- aUGCUgc-GCAGcuUGuCGCCGCCGGcgaCCg -3'
miRNA:   3'- cGCGGaaaCGUU--AC-GCGGCGGCCa--GG- -5'
21190 3' -56.8 NC_004778.3 + 79834 0.67 0.803229
Target:  5'- aGCGCCc---CAGUGCGCuCGCaCGG-CUa -3'
miRNA:   3'- -CGCGGaaacGUUACGCG-GCG-GCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 61286 0.66 0.861436
Target:  5'- cGCGCUa---CGAUGCGCCGUCG--CCg -3'
miRNA:   3'- -CGCGGaaacGUUACGCGGCGGCcaGG- -5'
21190 3' -56.8 NC_004778.3 + 19280 0.66 0.844938
Target:  5'- uGCGCCUUUaguuugucguacgGCAGcugcacUGUGCCguauacggaccgGCCGGUgCCc -3'
miRNA:   3'- -CGCGGAAA-------------CGUU------ACGCGG------------CGGCCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 24237 0.67 0.794226
Target:  5'- -aGCUUgUGCGAcgGCGCCGCguuuGUCCa -3'
miRNA:   3'- cgCGGAaACGUUa-CGCGGCGgc--CAGG- -5'
21190 3' -56.8 NC_004778.3 + 96003 0.67 0.785075
Target:  5'- cGCGCUUUUc----GCGCCGCCGcaUCCa -3'
miRNA:   3'- -CGCGGAAAcguuaCGCGGCGGCc-AGG- -5'
21190 3' -56.8 NC_004778.3 + 97314 0.66 0.861436
Target:  5'- aGCGCCgucgUGCAG-GCGCUGaaGGa-- -3'
miRNA:   3'- -CGCGGaa--ACGUUaCGCGGCggCCagg -5'
21190 3' -56.8 NC_004778.3 + 96534 0.66 0.853691
Target:  5'- cGCGUCUgcgggcgUGCAc-GCGCCGUgcaCGG-CCa -3'
miRNA:   3'- -CGCGGAa------ACGUuaCGCGGCG---GCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.