Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 95277 | 0.66 | 0.861436 |
Target: 5'- aUGCUgc-GCAGcuUGuCGCCGCCGGcgaCCg -3' miRNA: 3'- cGCGGaaaCGUU--AC-GCGGCGGCCa--GG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 47711 | 0.7 | 0.604569 |
Target: 5'- cGCGCCggauaucGCAG-GCGCCGCuacuaagCGGUCa -3' miRNA: 3'- -CGCGGaaa----CGUUaCGCGGCG-------GCCAGg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 48935 | 0.69 | 0.66609 |
Target: 5'- -aGCCUgaGCGAgcUGCGCgacuugggcugcgUGCUGGUCCu -3' miRNA: 3'- cgCGGAaaCGUU--ACGCG-------------GCGGCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 91807 | 0.68 | 0.747181 |
Target: 5'- gGUGCCg--GuCAcgGCGCCGCCGa--- -3' miRNA: 3'- -CGCGGaaaC-GUuaCGCGGCGGCcagg -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 79834 | 0.67 | 0.803229 |
Target: 5'- aGCGCCc---CAGUGCGCuCGCaCGG-CUa -3' miRNA: 3'- -CGCGGaaacGUUACGCG-GCG-GCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 59501 | 0.72 | 0.523909 |
Target: 5'- cGCGCUUUUaaGCGcggcaauuuuGUGUGCCGCgguagauucauacCGGUCCg -3' miRNA: 3'- -CGCGGAAA--CGU----------UACGCGGCG-------------GCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 80112 | 0.71 | 0.554789 |
Target: 5'- gGUGCCgcacacGUuGUGCGgCGCCGcGUCCa -3' miRNA: 3'- -CGCGGaaa---CGuUACGCgGCGGC-CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 114073 | 0.66 | 0.837601 |
Target: 5'- aGCGUCggcgaaaGCGGUGUcuuGCUGCCGcguGUCCa -3' miRNA: 3'- -CGCGGaaa----CGUUACG---CGGCGGC---CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 10639 | 0.69 | 0.717662 |
Target: 5'- gGCGCCgcuggGCcucguaauUGUGCgCGCCGG-CCg -3' miRNA: 3'- -CGCGGaaa--CGuu------ACGCG-GCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 76613 | 0.68 | 0.73743 |
Target: 5'- aGCGCCg--GCAugGCGUCGg-GGUCCa -3' miRNA: 3'- -CGCGGaaaCGUuaCGCGGCggCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 90013 | 0.66 | 0.845744 |
Target: 5'- -aGUCg--GCAAaGCGgCGCCGGUgCu -3' miRNA: 3'- cgCGGaaaCGUUaCGCgGCGGCCAgG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 109111 | 0.66 | 0.845744 |
Target: 5'- uCGaCCcgUGCGuUGUGCCGCCgauGGUgCCg -3' miRNA: 3'- cGC-GGaaACGUuACGCGGCGG---CCA-GG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 10678 | 0.73 | 0.476542 |
Target: 5'- cGCGCCcgaagcgugGCAcguguugaguGUGCGCCGCCGcG-CCg -3' miRNA: 3'- -CGCGGaaa------CGU----------UACGCGGCGGC-CaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 127755 | 0.72 | 0.505309 |
Target: 5'- uGCGCC--UGCuc-GCGCUGCUGG-CCg -3' miRNA: 3'- -CGCGGaaACGuuaCGCGGCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 13386 | 0.69 | 0.667113 |
Target: 5'- -aGCCUaggggccGCAcacAUGCGCaCGCCGGaCCa -3' miRNA: 3'- cgCGGAaa-----CGU---UACGCG-GCGGCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 10575 | 0.67 | 0.785075 |
Target: 5'- uUGuCCUcagUUGC-GUGCGCgCGCCGuGUCUg -3' miRNA: 3'- cGC-GGA---AACGuUACGCG-GCGGC-CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 24237 | 0.67 | 0.794226 |
Target: 5'- -aGCUUgUGCGAcgGCGCCGCguuuGUCCa -3' miRNA: 3'- cgCGGAaACGUUa-CGCGGCGgc--CAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 96534 | 0.66 | 0.853691 |
Target: 5'- cGCGUCUgcgggcgUGCAc-GCGCCGUgcaCGG-CCa -3' miRNA: 3'- -CGCGGAa------ACGUuaCGCGGCG---GCCaGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 47659 | 0.67 | 0.776721 |
Target: 5'- aCGCCgccccgGCAGgccgcgcaccuaccgGCGCaGUCGGUCCg -3' miRNA: 3'- cGCGGaaa---CGUUa--------------CGCGgCGGCCAGG- -5' |
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21190 | 3' | -56.8 | NC_004778.3 | + | 19492 | 0.69 | 0.697599 |
Target: 5'- cGCGCCgacgUGCAAaugguUGCGCaccuCGUCGGgcacuUCCa -3' miRNA: 3'- -CGCGGaa--ACGUU-----ACGCG----GCGGCC-----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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