miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 25457 0.71 0.595364
Target:  5'- cUGCaac-GCAGUGCGCCuuGCCGGUUUg -3'
miRNA:   3'- cGCGgaaaCGUUACGCGG--CGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 30414 0.68 0.73743
Target:  5'- aGCGCC---GCGAcGCGuuGCCGGg-- -3'
miRNA:   3'- -CGCGGaaaCGUUaCGCggCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 31244 0.66 0.861436
Target:  5'- uUGUCcUUGUug-GCGUCGCCGGUgugCCu -3'
miRNA:   3'- cGCGGaAACGuuaCGCGGCGGCCA---GG- -5'
21190 3' -56.8 NC_004778.3 + 32132 0.71 0.554789
Target:  5'- aGCGCCUgcacgacgGCGcuccaAUGCGCCG-CGG-CCa -3'
miRNA:   3'- -CGCGGAaa------CGU-----UACGCGGCgGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 33558 0.66 0.853691
Target:  5'- uGCGUaagUGCGucuauuUGCGCacCGCUGGUCa -3'
miRNA:   3'- -CGCGgaaACGUu-----ACGCG--GCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 34483 0.67 0.785075
Target:  5'- cGCGUCUcgGaCcGUGCGCgGCCGG-Ca -3'
miRNA:   3'- -CGCGGAaaC-GuUACGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 43988 0.66 0.837601
Target:  5'- cGCGCCgcc-CAAcGCGCgGCCGG-Cg -3'
miRNA:   3'- -CGCGGaaacGUUaCGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 45325 0.67 0.775786
Target:  5'- cCGCUgugUGCGcu-CGCCGCCGGUg- -3'
miRNA:   3'- cGCGGaa-ACGUuacGCGGCGGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 45602 0.69 0.717662
Target:  5'- cGCGCCUUcUGCAuagccGCGCCcucgucGCCGG-Cg -3'
miRNA:   3'- -CGCGGAA-ACGUua---CGCGG------CGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 47659 0.67 0.776721
Target:  5'- aCGCCgccccgGCAGgccgcgcaccuaccgGCGCaGUCGGUCCg -3'
miRNA:   3'- cGCGGaaa---CGUUa--------------CGCGgCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 47711 0.7 0.604569
Target:  5'- cGCGCCggauaucGCAG-GCGCCGCuacuaagCGGUCa -3'
miRNA:   3'- -CGCGGaaa----CGUUaCGCGGCG-------GCCAGg -5'
21190 3' -56.8 NC_004778.3 + 48935 0.69 0.66609
Target:  5'- -aGCCUgaGCGAgcUGCGCgacuugggcugcgUGCUGGUCCu -3'
miRNA:   3'- cgCGGAaaCGUU--ACGCG-------------GCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 51278 0.71 0.595364
Target:  5'- uGCGUCUUUGCuggacAUGCGCCcgaGGUCg -3'
miRNA:   3'- -CGCGGAAACGu----UACGCGGcggCCAGg -5'
21190 3' -56.8 NC_004778.3 + 57466 0.66 0.837601
Target:  5'- uGUGCCUggGCAA-GCuGCCGCUG--CCg -3'
miRNA:   3'- -CGCGGAaaCGUUaCG-CGGCGGCcaGG- -5'
21190 3' -56.8 NC_004778.3 + 58174 0.67 0.812077
Target:  5'- uCGCCgccGC----CGCCGCCGuGUCCg -3'
miRNA:   3'- cGCGGaaaCGuuacGCGGCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 59501 0.72 0.523909
Target:  5'- cGCGCUUUUaaGCGcggcaauuuuGUGUGCCGCgguagauucauacCGGUCCg -3'
miRNA:   3'- -CGCGGAAA--CGU----------UACGCGGCG-------------GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 61286 0.66 0.861436
Target:  5'- cGCGCUa---CGAUGCGCCGUCG--CCg -3'
miRNA:   3'- -CGCGGaaacGUUACGCGGCGGCcaGG- -5'
21190 3' -56.8 NC_004778.3 + 63431 0.66 0.860671
Target:  5'- gGCGaCg--GCGAUGCGUCGCCaaauucuGGcCCu -3'
miRNA:   3'- -CGCgGaaaCGUUACGCGGCGG-------CCaGG- -5'
21190 3' -56.8 NC_004778.3 + 72426 0.67 0.81557
Target:  5'- uGCGCCacaaagUGUAGgcgGCaaacucgccuggcccGCCGCacaGGUCCa -3'
miRNA:   3'- -CGCGGaa----ACGUUa--CG---------------CGGCGg--CCAGG- -5'
21190 3' -56.8 NC_004778.3 + 76613 0.68 0.73743
Target:  5'- aGCGCCg--GCAugGCGUCGg-GGUCCa -3'
miRNA:   3'- -CGCGGaaaCGUuaCGCGGCggCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.