miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 48935 0.69 0.66609
Target:  5'- -aGCCUgaGCGAgcUGCGCgacuugggcugcgUGCUGGUCCu -3'
miRNA:   3'- cgCGGAaaCGUU--ACGCG-------------GCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 13386 0.69 0.667113
Target:  5'- -aGCCUaggggccGCAcacAUGCGCaCGCCGGaCCa -3'
miRNA:   3'- cgCGGAaa-----CGU---UACGCG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 92894 0.69 0.667113
Target:  5'- cGCGCCg--GUuccaAAUGCGgCGCgucaUGGUCCa -3'
miRNA:   3'- -CGCGGaaaCG----UUACGCgGCG----GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 14509 0.69 0.674258
Target:  5'- -gGCC---GCGGUGCGCaCGCCGGcuugcgcuuuagcgUCCa -3'
miRNA:   3'- cgCGGaaaCGUUACGCG-GCGGCC--------------AGG- -5'
21190 3' -56.8 NC_004778.3 + 97402 0.69 0.677315
Target:  5'- gGCGgCgc-GCAAggaaGCCGCCGGUUCu -3'
miRNA:   3'- -CGCgGaaaCGUUacg-CGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 19492 0.69 0.697599
Target:  5'- cGCGCCgacgUGCAAaugguUGCGCaccuCGUCGGgcacuUCCa -3'
miRNA:   3'- -CGCGGaa--ACGUU-----ACGCG----GCGGCC-----AGG- -5'
21190 3' -56.8 NC_004778.3 + 112507 0.69 0.697599
Target:  5'- -aGCCggUGCAuGUGCGCCGCguaaCGGcUCg -3'
miRNA:   3'- cgCGGaaACGU-UACGCGGCG----GCC-AGg -5'
21190 3' -56.8 NC_004778.3 + 81773 0.69 0.707662
Target:  5'- uGCGCCgguaggUGCGcgGC-CUGCCGGg-- -3'
miRNA:   3'- -CGCGGaa----ACGUuaCGcGGCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 90454 0.69 0.707662
Target:  5'- -gGCCUggcUUGCuAcgGCGCCGCCGuGaUCa -3'
miRNA:   3'- cgCGGA---AACG-UuaCGCGGCGGC-C-AGg -5'
21190 3' -56.8 NC_004778.3 + 115994 0.69 0.707662
Target:  5'- uGUGUgUUaGCGG-GCGCCGCCGGg-- -3'
miRNA:   3'- -CGCGgAAaCGUUaCGCGGCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 116746 0.69 0.717662
Target:  5'- uCGCCaaaGCu---CGCCGCCGGUCg -3'
miRNA:   3'- cGCGGaaaCGuuacGCGGCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 10639 0.69 0.717662
Target:  5'- gGCGCCgcuggGCcucguaauUGUGCgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaa--CGuu------ACGCG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 45602 0.69 0.717662
Target:  5'- cGCGCCUUcUGCAuagccGCGCCcucgucGCCGG-Cg -3'
miRNA:   3'- -CGCGGAA-ACGUua---CGCGG------CGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 95763 0.68 0.733504
Target:  5'- cGCGCCgggcgcuauccGCGcgGCaGCgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaa--------CGUuaCG-CG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 30414 0.68 0.73743
Target:  5'- aGCGCC---GCGAcGCGuuGCCGGg-- -3'
miRNA:   3'- -CGCGGaaaCGUUaCGCggCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 76613 0.68 0.73743
Target:  5'- aGCGCCg--GCAugGCGUCGg-GGUCCa -3'
miRNA:   3'- -CGCGGaaaCGUuaCGCGGCggCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 91807 0.68 0.747181
Target:  5'- gGUGCCg--GuCAcgGCGCCGCCGa--- -3'
miRNA:   3'- -CGCGGaaaC-GUuaCGCGGCGGCcagg -5'
21190 3' -56.8 NC_004778.3 + 4270 0.67 0.775786
Target:  5'- cGCGCCUcuucgaaGCGAauaauUGCGUCGgCCGGUg- -3'
miRNA:   3'- -CGCGGAaa-----CGUU-----ACGCGGC-GGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 121429 0.67 0.775786
Target:  5'- cGCGUCg--GCcGUGuCGCCGCCGucggcgCCg -3'
miRNA:   3'- -CGCGGaaaCGuUAC-GCGGCGGCca----GG- -5'
21190 3' -56.8 NC_004778.3 + 45325 0.67 0.775786
Target:  5'- cCGCUgugUGCGcu-CGCCGCCGGUg- -3'
miRNA:   3'- cGCGGaa-ACGUuacGCGGCGGCCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.