miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 119163 1.13 0.001147
Target:  5'- aGCGCCUUUGCAAUGCGCCGCCGGUCCc -3'
miRNA:   3'- -CGCGGAAACGUUACGCGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 77374 0.84 0.102828
Target:  5'- cGCGCUggUGCAAUGCGCacgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaACGUUACGCG---GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 113894 0.75 0.387176
Target:  5'- cGCGUCgg-GCGAaggcgGCGCCGCgGGUUCc -3'
miRNA:   3'- -CGCGGaaaCGUUa----CGCGGCGgCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 112206 0.74 0.404161
Target:  5'- gGCGCCcucgcGCAuaGCgGCCGCgCGGUCCa -3'
miRNA:   3'- -CGCGGaaa--CGUuaCG-CGGCG-GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 121522 0.74 0.430501
Target:  5'- cGCGCUaaagGUGAgguaaGCGCCGCCGG-CCa -3'
miRNA:   3'- -CGCGGaaa-CGUUa----CGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 10678 0.73 0.476542
Target:  5'- cGCGCCcgaagcgugGCAcguguugaguGUGCGCCGCCGcG-CCg -3'
miRNA:   3'- -CGCGGaaa------CGU----------UACGCGGCGGC-CaGG- -5'
21190 3' -56.8 NC_004778.3 + 110112 0.72 0.495633
Target:  5'- cGCGCCga-GCGcuUGgGCaccgGCCGGUCCg -3'
miRNA:   3'- -CGCGGaaaCGUu-ACgCGg---CGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 97162 0.72 0.495633
Target:  5'- -aGCCcga-CAcgGCGCCGCCGG-CCa -3'
miRNA:   3'- cgCGGaaacGUuaCGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 127755 0.72 0.505309
Target:  5'- uGCGCC--UGCuc-GCGCUGCUGG-CCg -3'
miRNA:   3'- -CGCGGaaACGuuaCGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 59501 0.72 0.523909
Target:  5'- cGCGCUUUUaaGCGcggcaauuuuGUGUGCCGCgguagauucauacCGGUCCg -3'
miRNA:   3'- -CGCGGAAA--CGU----------UACGCGGCG-------------GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 119979 0.72 0.523909
Target:  5'- uUGCCagUGUGAgcUGCGCCGCCGagacgacggccguGUCCa -3'
miRNA:   3'- cGCGGaaACGUU--ACGCGGCGGC-------------CAGG- -5'
21190 3' -56.8 NC_004778.3 + 80112 0.71 0.554789
Target:  5'- gGUGCCgcacacGUuGUGCGgCGCCGcGUCCa -3'
miRNA:   3'- -CGCGGaaa---CGuUACGCgGCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 86333 0.71 0.554789
Target:  5'- aGCGCUUgcGCA--GCaGCCGCCGGUa- -3'
miRNA:   3'- -CGCGGAaaCGUuaCG-CGGCGGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 7859 0.71 0.554789
Target:  5'- cGCGCCUUaacaccuaucUGCAggGCGCCaaaacgGCCGG-Cg -3'
miRNA:   3'- -CGCGGAA----------ACGUuaCGCGG------CGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 32132 0.71 0.554789
Target:  5'- aGCGCCUgcacgacgGCGcuccaAUGCGCCG-CGG-CCa -3'
miRNA:   3'- -CGCGGAaa------CGU-----UACGCGGCgGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 14126 0.71 0.574995
Target:  5'- ----aUUUGCAAUGUGCgGCCGG-CCg -3'
miRNA:   3'- cgcggAAACGUUACGCGgCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 25457 0.71 0.595364
Target:  5'- cUGCaac-GCAGUGCGCCuuGCCGGUUUg -3'
miRNA:   3'- cGCGgaaaCGUUACGCGG--CGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 51278 0.71 0.595364
Target:  5'- uGCGUCUUUGCuggacAUGCGCCcgaGGUCg -3'
miRNA:   3'- -CGCGGAAACGu----UACGCGGcggCCAGg -5'
21190 3' -56.8 NC_004778.3 + 47711 0.7 0.604569
Target:  5'- cGCGCCggauaucGCAG-GCGCCGCuacuaagCGGUCa -3'
miRNA:   3'- -CGCGGaaa----CGUUaCGCGGCG-------GCCAGg -5'
21190 3' -56.8 NC_004778.3 + 7347 0.7 0.646631
Target:  5'- aGCGCacaagGUccgAAUGCGCgUGCCGGUCg -3'
miRNA:   3'- -CGCGgaaa-CG---UUACGCG-GCGGCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.