miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 1509 0.67 0.812077
Target:  5'- uUGCCcc-GCGggGCGCUGCCgaGGUCg -3'
miRNA:   3'- cGCGGaaaCGUuaCGCGGCGG--CCAGg -5'
21190 3' -56.8 NC_004778.3 + 1826 0.66 0.829271
Target:  5'- cGCGCCUgcgGCGggGUuCCacacCUGGUCCa -3'
miRNA:   3'- -CGCGGAaa-CGUuaCGcGGc---GGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 2448 0.66 0.861436
Target:  5'- -gGCCcgagUGCGGcaCGCCGCUGGUUa -3'
miRNA:   3'- cgCGGaa--ACGUUacGCGGCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 4050 0.66 0.829271
Target:  5'- uCGCCggcggGCAGgccgaGCGCCuGCCugaugGGUCCc -3'
miRNA:   3'- cGCGGaaa--CGUUa----CGCGG-CGG-----CCAGG- -5'
21190 3' -56.8 NC_004778.3 + 4270 0.67 0.775786
Target:  5'- cGCGCCUcuucgaaGCGAauaauUGCGUCGgCCGGUg- -3'
miRNA:   3'- -CGCGGAaa-----CGUU-----ACGCGGC-GGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 5065 0.67 0.785075
Target:  5'- aCGCCaacaccccCGucaGcCGCCGCCGGUCCg -3'
miRNA:   3'- cGCGGaaac----GUua-C-GCGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 7347 0.7 0.646631
Target:  5'- aGCGCacaagGUccgAAUGCGCgUGCCGGUCg -3'
miRNA:   3'- -CGCGgaaa-CG---UUACGCG-GCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 7859 0.71 0.554789
Target:  5'- cGCGCCUUaacaccuaucUGCAggGCGCCaaaacgGCCGG-Cg -3'
miRNA:   3'- -CGCGGAA----------ACGUuaCGCGG------CGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 8469 0.66 0.868974
Target:  5'- gGCGCCgggGCAGcggGCGCgGCCcGcgCCc -3'
miRNA:   3'- -CGCGGaaaCGUUa--CGCGgCGGcCa-GG- -5'
21190 3' -56.8 NC_004778.3 + 8706 0.67 0.797845
Target:  5'- cGCGCCgggUUaCGGuuuggccgagaacuuUGaCGCCGCCGGcgCCg -3'
miRNA:   3'- -CGCGGa--AAcGUU---------------AC-GCGGCGGCCa-GG- -5'
21190 3' -56.8 NC_004778.3 + 10575 0.67 0.785075
Target:  5'- uUGuCCUcagUUGC-GUGCGCgCGCCGuGUCUg -3'
miRNA:   3'- cGC-GGA---AACGuUACGCG-GCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 10639 0.69 0.717662
Target:  5'- gGCGCCgcuggGCcucguaauUGUGCgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaa--CGuu------ACGCG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 10678 0.73 0.476542
Target:  5'- cGCGCCcgaagcgugGCAcguguugaguGUGCGCCGCCGcG-CCg -3'
miRNA:   3'- -CGCGGaaa------CGU----------UACGCGGCGGC-CaGG- -5'
21190 3' -56.8 NC_004778.3 + 13386 0.69 0.667113
Target:  5'- -aGCCUaggggccGCAcacAUGCGCaCGCCGGaCCa -3'
miRNA:   3'- cgCGGAaa-----CGU---UACGCG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 14126 0.71 0.574995
Target:  5'- ----aUUUGCAAUGUGCgGCCGG-CCg -3'
miRNA:   3'- cgcggAAACGUUACGCGgCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 14509 0.69 0.674258
Target:  5'- -gGCC---GCGGUGCGCaCGCCGGcuugcgcuuuagcgUCCa -3'
miRNA:   3'- cgCGGaaaCGUUACGCG-GCGGCC--------------AGG- -5'
21190 3' -56.8 NC_004778.3 + 19280 0.66 0.844938
Target:  5'- uGCGCCUUUaguuugucguacgGCAGcugcacUGUGCCguauacggaccgGCCGGUgCCc -3'
miRNA:   3'- -CGCGGAAA-------------CGUU------ACGCGG------------CGGCCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 19492 0.69 0.697599
Target:  5'- cGCGCCgacgUGCAAaugguUGCGCaccuCGUCGGgcacuUCCa -3'
miRNA:   3'- -CGCGGaa--ACGUU-----ACGCG----GCGGCC-----AGG- -5'
21190 3' -56.8 NC_004778.3 + 24237 0.67 0.794226
Target:  5'- -aGCUUgUGCGAcgGCGCCGCguuuGUCCa -3'
miRNA:   3'- cgCGGAaACGUUa-CGCGGCGgc--CAGG- -5'
21190 3' -56.8 NC_004778.3 + 25269 0.66 0.853691
Target:  5'- aGCGCauaaucuccaCUUUGCAAaacGCGCagcgcacuucguCGCCGcGUCCc -3'
miRNA:   3'- -CGCG----------GAAACGUUa--CGCG------------GCGGC-CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.