miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 127755 0.72 0.505309
Target:  5'- uGCGCC--UGCuc-GCGCUGCUGG-CCg -3'
miRNA:   3'- -CGCGGaaACGuuaCGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 121522 0.74 0.430501
Target:  5'- cGCGCUaaagGUGAgguaaGCGCCGCCGG-CCa -3'
miRNA:   3'- -CGCGGaaa-CGUUa----CGCGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 121429 0.67 0.775786
Target:  5'- cGCGUCg--GCcGUGuCGCCGCCGucggcgCCg -3'
miRNA:   3'- -CGCGGaaaCGuUAC-GCGGCGGCca----GG- -5'
21190 3' -56.8 NC_004778.3 + 119979 0.72 0.523909
Target:  5'- uUGCCagUGUGAgcUGCGCCGCCGagacgacggccguGUCCa -3'
miRNA:   3'- cGCGGaaACGUU--ACGCGGCGGC-------------CAGG- -5'
21190 3' -56.8 NC_004778.3 + 119163 1.13 0.001147
Target:  5'- aGCGCCUUUGCAAUGCGCCGCCGGUCCc -3'
miRNA:   3'- -CGCGGAAACGUUACGCGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 118774 0.67 0.794226
Target:  5'- aCGCUUcggGCGcgGCGCgGCCGG-Cg -3'
miRNA:   3'- cGCGGAaa-CGUuaCGCGgCGGCCaGg -5'
21190 3' -56.8 NC_004778.3 + 117677 0.66 0.861436
Target:  5'- gGCGUgc-UGCuGUGCGCCGuggaCCGG-CCg -3'
miRNA:   3'- -CGCGgaaACGuUACGCGGC----GGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 116746 0.69 0.717662
Target:  5'- uCGCCaaaGCu---CGCCGCCGGUCg -3'
miRNA:   3'- cGCGGaaaCGuuacGCGGCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 115994 0.69 0.707662
Target:  5'- uGUGUgUUaGCGG-GCGCCGCCGGg-- -3'
miRNA:   3'- -CGCGgAAaCGUUaCGCGGCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 115284 0.66 0.864477
Target:  5'- uCGCauugUUUGCuAUGCGCCgaaaaaauugaggcgGCCGG-CCg -3'
miRNA:   3'- cGCGg---AAACGuUACGCGG---------------CGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 114073 0.66 0.837601
Target:  5'- aGCGUCggcgaaaGCGGUGUcuuGCUGCCGcguGUCCa -3'
miRNA:   3'- -CGCGGaaa----CGUUACG---CGGCGGC---CAGG- -5'
21190 3' -56.8 NC_004778.3 + 113894 0.75 0.387176
Target:  5'- cGCGUCgg-GCGAaggcgGCGCCGCgGGUUCc -3'
miRNA:   3'- -CGCGGaaaCGUUa----CGCGGCGgCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 112507 0.69 0.697599
Target:  5'- -aGCCggUGCAuGUGCGCCGCguaaCGGcUCg -3'
miRNA:   3'- cgCGGaaACGU-UACGCGGCG----GCC-AGg -5'
21190 3' -56.8 NC_004778.3 + 112206 0.74 0.404161
Target:  5'- gGCGCCcucgcGCAuaGCgGCCGCgCGGUCCa -3'
miRNA:   3'- -CGCGGaaa--CGUuaCG-CGGCG-GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 110112 0.72 0.495633
Target:  5'- cGCGCCga-GCGcuUGgGCaccgGCCGGUCCg -3'
miRNA:   3'- -CGCGGaaaCGUu-ACgCGg---CGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 109111 0.66 0.845744
Target:  5'- uCGaCCcgUGCGuUGUGCCGCCgauGGUgCCg -3'
miRNA:   3'- cGC-GGaaACGUuACGCGGCGG---CCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 108416 0.66 0.856814
Target:  5'- uUGCCgcgGCGcagguggacgcgcugGUGCGCCGCgGG-CUg -3'
miRNA:   3'- cGCGGaaaCGU---------------UACGCGGCGgCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 100600 0.66 0.829271
Target:  5'- uUGCCcgUUUGCAGU-UGuaGCUGGUCCa -3'
miRNA:   3'- cGCGG--AAACGUUAcGCggCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 97402 0.69 0.677315
Target:  5'- gGCGgCgc-GCAAggaaGCCGCCGGUUCu -3'
miRNA:   3'- -CGCgGaaaCGUUacg-CGGCGGCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 97314 0.66 0.861436
Target:  5'- aGCGCCgucgUGCAG-GCGCUGaaGGa-- -3'
miRNA:   3'- -CGCGGaa--ACGUUaCGCGGCggCCagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.