Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 34441 | 0.72 | 0.522352 |
Target: 5'- gUCGGCGCaCgGCGCGCgcggaaaGAACGCCUc -3' miRNA: 3'- -AGCCGCGcGaCGCGUGa------UUUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 119918 | 0.72 | 0.538449 |
Target: 5'- aCGGCGCGCaaaucgucgauacGCGCGCgguACGCCUc -3' miRNA: 3'- aGCCGCGCGa------------CGCGUGauuUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 108728 | 0.72 | 0.5425 |
Target: 5'- gUGGCaGCGCUGCGuCGCg--GCACCa- -3' miRNA: 3'- aGCCG-CGCGACGC-GUGauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 98194 | 0.72 | 0.548595 |
Target: 5'- cUCGGCGCGaggUGCGCGCgccacggacagcAACGCCUc -3' miRNA: 3'- -AGCCGCGCg--ACGCGUGau----------UUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 63694 | 0.71 | 0.573176 |
Target: 5'- cCGGCuCGCUGCGC-C-AAACGCCg- -3' miRNA: 3'- aGCCGcGCGACGCGuGaUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 67807 | 0.71 | 0.614648 |
Target: 5'- gUUGGCGCGCgcugGCuGCGCggcgccAAACGCUUGc -3' miRNA: 3'- -AGCCGCGCGa---CG-CGUGa-----UUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 95004 | 0.71 | 0.614648 |
Target: 5'- cCGcGCGCGCcGUGCGCcGAcgggcagguGCGCCUGg -3' miRNA: 3'- aGC-CGCGCGaCGCGUGaUU---------UGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 108351 | 0.71 | 0.614648 |
Target: 5'- cUCcGCGgGCUGCaccGCGCU-GACGCCUGu -3' miRNA: 3'- -AGcCGCgCGACG---CGUGAuUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 22986 | 0.71 | 0.614648 |
Target: 5'- uUUGcGCGCGCaGCGCGCUcAGCGCgUUGg -3' miRNA: 3'- -AGC-CGCGCGaCGCGUGAuUUGUG-GAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 126938 | 0.71 | 0.625069 |
Target: 5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3' miRNA: 3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 110104 | 0.71 | 0.625069 |
Target: 5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3' miRNA: 3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 12134 | 0.7 | 0.64592 |
Target: 5'- uUCGGUGaCGgUGCGCACcuuguuGCACCg- -3' miRNA: 3'- -AGCCGC-GCgACGCGUGauu---UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 51141 | 0.7 | 0.656333 |
Target: 5'- cCGGCGCGCgGCugaaGCACUuuGcCGCCUu -3' miRNA: 3'- aGCCGCGCGaCG----CGUGAuuU-GUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 104468 | 0.7 | 0.656333 |
Target: 5'- aUCaGCuGCGCUGCGUGC--AACACCUc -3' miRNA: 3'- -AGcCG-CGCGACGCGUGauUUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 49854 | 0.7 | 0.666726 |
Target: 5'- -gGGCGCGCuUGCGgGCUGcaucguCGCUUGg -3' miRNA: 3'- agCCGCGCG-ACGCgUGAUuu----GUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 57361 | 0.7 | 0.669839 |
Target: 5'- aCGGCGaaaCGCUGCGCACgcugcaacaguuugcGCGCCa- -3' miRNA: 3'- aGCCGC---GCGACGCGUGauu------------UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 25885 | 0.7 | 0.676055 |
Target: 5'- cCGGCGCGaccguggGCGCuggcacgcucgucGCUGGGCGCUUGc -3' miRNA: 3'- aGCCGCGCga-----CGCG-------------UGAUUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 140 | 0.7 | 0.67709 |
Target: 5'- gCGGCGCGUccgcgGCGUAC--AGCGCCa- -3' miRNA: 3'- aGCCGCGCGa----CGCGUGauUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 85611 | 0.69 | 0.687415 |
Target: 5'- aCGGcCGCGCaauuaGCGCGCUGuAGCGCUg- -3' miRNA: 3'- aGCC-GCGCGa----CGCGUGAU-UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 51716 | 0.69 | 0.697693 |
Target: 5'- cUCGGUGCGCgcggGUGUGCUGAggucguagauccGCACgUGc -3' miRNA: 3'- -AGCCGCGCGa---CGCGUGAUU------------UGUGgAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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