miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 5' -57.8 NC_004778.3 + 7828 0.66 0.802853
Target:  5'- -----gACGGCGUggaCCGcGCGCUGCAg -3'
miRNA:   3'- uuuuagUGCCGCGag-GGC-UGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 7726 0.66 0.801056
Target:  5'- ----cUACGGCGCgccgacaacgugCCCGACGCgggccUGCAc -3'
miRNA:   3'- uuuuaGUGCCGCGa-----------GGGCUGCG-----GCGU- -5'
21196 5' -57.8 NC_004778.3 + 43846 0.66 0.793805
Target:  5'- ----gCGCGGC-CgUCCGACGCgGCAa -3'
miRNA:   3'- uuuuaGUGCCGcGaGGGCUGCGgCGU- -5'
21196 5' -57.8 NC_004778.3 + 25784 0.66 0.784608
Target:  5'- gGAGAaCACGGUGCUacaCCgCGACGgCGUg -3'
miRNA:   3'- -UUUUaGUGCCGCGA---GG-GCUGCgGCGu -5'
21196 5' -57.8 NC_004778.3 + 85692 0.66 0.781822
Target:  5'- -cGAUCGCGcGCgGUggacacaugaugugUCCCGGCGCgGCGc -3'
miRNA:   3'- uuUUAGUGC-CG-CG--------------AGGGCUGCGgCGU- -5'
21196 5' -57.8 NC_004778.3 + 21013 0.66 0.775273
Target:  5'- ----cCGCGGCGCaccagcgcgUCCaccuGCGCCGCGg -3'
miRNA:   3'- uuuuaGUGCCGCG---------AGGgc--UGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 9448 0.66 0.775273
Target:  5'- ----aCACGGcCGUcgUCUCGGCGgCGCAg -3'
miRNA:   3'- uuuuaGUGCC-GCG--AGGGCUGCgGCGU- -5'
21196 5' -57.8 NC_004778.3 + 52925 0.66 0.765808
Target:  5'- --cGUCGcCGGCGCUCugCCGuuucaGCCGCc -3'
miRNA:   3'- uuuUAGU-GCCGCGAG--GGCug---CGGCGu -5'
21196 5' -57.8 NC_004778.3 + 85119 0.66 0.756222
Target:  5'- ---cUCGCGGCGCcgCUCGuCGCUgGCGg -3'
miRNA:   3'- uuuuAGUGCCGCGa-GGGCuGCGG-CGU- -5'
21196 5' -57.8 NC_004778.3 + 61068 0.66 0.756222
Target:  5'- cGAAUCGCGGCGCcgaCUGAaUGCgCGCu -3'
miRNA:   3'- uUUUAGUGCCGCGag-GGCU-GCG-GCGu -5'
21196 5' -57.8 NC_004778.3 + 85271 0.66 0.756222
Target:  5'- ----aCACGGCGCccgcguccaUgCCGuCGCCGCc -3'
miRNA:   3'- uuuuaGUGCCGCG---------AgGGCuGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 32908 0.67 0.746525
Target:  5'- -uGGUCACuuggcaGGCGCUCCCauuuuCGcCCGCGu -3'
miRNA:   3'- uuUUAGUG------CCGCGAGGGcu---GC-GGCGU- -5'
21196 5' -57.8 NC_004778.3 + 33683 0.67 0.736726
Target:  5'- ----gCGCGGauaGCgCCCGGCGCgGCu -3'
miRNA:   3'- uuuuaGUGCCg--CGaGGGCUGCGgCGu -5'
21196 5' -57.8 NC_004778.3 + 59227 0.67 0.736726
Target:  5'- --uGUC-CGGCGCU-UgGGCGCCGUAg -3'
miRNA:   3'- uuuUAGuGCCGCGAgGgCUGCGGCGU- -5'
21196 5' -57.8 NC_004778.3 + 34196 0.67 0.736726
Target:  5'- ----cCGCGGCGCaccaugCCCGAgucCGCgGCGa -3'
miRNA:   3'- uuuuaGUGCCGCGa-----GGGCU---GCGgCGU- -5'
21196 5' -57.8 NC_004778.3 + 119153 0.67 0.736726
Target:  5'- cGAAGUCGCGaGCGCcUuuGcaauGCGCCGCc -3'
miRNA:   3'- -UUUUAGUGC-CGCGaGggC----UGCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 91812 0.67 0.736726
Target:  5'- -cGGUCACGGCGC-CgCCGAuuuuuuuacCGCUGUg -3'
miRNA:   3'- uuUUAGUGCCGCGaG-GGCU---------GCGGCGu -5'
21196 5' -57.8 NC_004778.3 + 15546 0.67 0.726836
Target:  5'- ----cCGCGGCGCcgccuucgCCCGACG-CGCc -3'
miRNA:   3'- uuuuaGUGCCGCGa-------GGGCUGCgGCGu -5'
21196 5' -57.8 NC_004778.3 + 94981 0.67 0.716861
Target:  5'- ----cCGCGguGCGCUCCuCGACG-CGCAg -3'
miRNA:   3'- uuuuaGUGC--CGCGAGG-GCUGCgGCGU- -5'
21196 5' -57.8 NC_004778.3 + 43132 0.67 0.716861
Target:  5'- ---uUCgACGGCGC-CgCGgcGCGCCGCAc -3'
miRNA:   3'- uuuuAG-UGCCGCGaGgGC--UGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.