Results 1 - 20 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 102704 | 0.66 | 0.874983 |
Target: 5'- cCCGCGCuGCagGCCGCgGCGUuuGCGGc -3' miRNA: 3'- cGGUGUG-UGagCGGCGgCGCA--UGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 44229 | 0.67 | 0.809528 |
Target: 5'- aUCGCGCACgucuucgaCGCUGCCGUGUuuguCGAAa -3' miRNA: 3'- cGGUGUGUGa-------GCGGCGGCGCAu---GUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 103467 | 0.67 | 0.79134 |
Target: 5'- uGCaGCACGCUcaaCGCCGUUaagGCGUACAGc -3' miRNA: 3'- -CGgUGUGUGA---GCGGCGG---CGCAUGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 101561 | 1.08 | 0.002477 |
Target: 5'- cGCCACACACUCGCCGCCGCGUACAAAc -3' miRNA: 3'- -CGGUGUGUGAGCGGCGGCGCAUGUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 38754 | 0.66 | 0.867519 |
Target: 5'- gGCCGCugGCUgGgCaCGCCGagaaGUACGc- -3' miRNA: 3'- -CGGUGugUGAgC-G-GCGGCg---CAUGUuu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 5140 | 0.66 | 0.859837 |
Target: 5'- uGCC-CACGC-CGgCGCCGCGcuuCAGc -3' miRNA: 3'- -CGGuGUGUGaGCgGCGGCGCau-GUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 21014 | 0.66 | 0.851942 |
Target: 5'- cGCgGCGCACcagCGCguccaccugCGCCGCG-GCAAAa -3' miRNA: 3'- -CGgUGUGUGa--GCG---------GCGGCGCaUGUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 89635 | 0.66 | 0.851942 |
Target: 5'- uCCACGCGC-CGacaauCGgCGCGUGCAAc -3' miRNA: 3'- cGGUGUGUGaGCg----GCgGCGCAUGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 83816 | 0.66 | 0.835541 |
Target: 5'- aCCACAaACUCaaCGCCGCG-ACGAGg -3' miRNA: 3'- cGGUGUgUGAGcgGCGGCGCaUGUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 89410 | 0.67 | 0.809528 |
Target: 5'- gGCC-CACgaauuugcaguGCUCGCuCGCCGaCGUGcCAAAa -3' miRNA: 3'- -CGGuGUG-----------UGAGCG-GCGGC-GCAU-GUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 2540 | 0.67 | 0.818377 |
Target: 5'- uCCAgCAUGCggCGCCGCCaGCaGUACAAc -3' miRNA: 3'- cGGU-GUGUGa-GCGGCGG-CG-CAUGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 40743 | 0.66 | 0.851942 |
Target: 5'- aGCgCACGCGC-CGCuUGCUGCGcgGCGAc -3' miRNA: 3'- -CG-GUGUGUGaGCG-GCGGCGCa-UGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 82084 | 0.66 | 0.874983 |
Target: 5'- cGCCGCACGCUgUGCaGCgGCG-GCAu- -3' miRNA: 3'- -CGGUGUGUGA-GCGgCGgCGCaUGUuu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 119938 | 0.67 | 0.818377 |
Target: 5'- -aCGCGCGCgguaCGCCuCCGCGUcgGCAAu -3' miRNA: 3'- cgGUGUGUGa---GCGGcGGCGCA--UGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 34743 | 0.66 | 0.874983 |
Target: 5'- aGCgCGCACGCUCGCgGUucagCGCGaaGCAGu -3' miRNA: 3'- -CG-GUGUGUGAGCGgCG----GCGCa-UGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 106860 | 0.66 | 0.851942 |
Target: 5'- uGCCGCGcCACUuugUGCCGCC-CaUGCAAAc -3' miRNA: 3'- -CGGUGU-GUGA---GCGGCGGcGcAUGUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 2362 | 0.67 | 0.818377 |
Target: 5'- -aCGCgaGCACUCGCCGg-GCGUGCAc- -3' miRNA: 3'- cgGUG--UGUGAGCGGCggCGCAUGUuu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 21265 | 0.67 | 0.800512 |
Target: 5'- -aCAUACAUUUGCCGCUGCaucugGCGAu -3' miRNA: 3'- cgGUGUGUGAGCGGCGGCGca---UGUUu -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 19476 | 0.66 | 0.867519 |
Target: 5'- cGUCGCACguaAUggGCgCGCCGaCGUGCAAAu -3' miRNA: 3'- -CGGUGUG---UGagCG-GCGGC-GCAUGUUU- -5' |
|||||||
21202 | 5' | -56.2 | NC_004778.3 | + | 10675 | 0.66 | 0.858275 |
Target: 5'- cGCCGCgcccgaagcgugGCACguguugagugugCGCCGCCGCGc-CGAGg -3' miRNA: 3'- -CGGUG------------UGUGa-----------GCGGCGGCGCauGUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home