miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21205 3' -65.5 NC_004778.3 + 95005 0.66 0.486545
Target:  5'- gCguGCCCGuguacagcaguacggGCACGccGCGCUGCCGGagCAg -3'
miRNA:   3'- -GguCGGGC---------------UGUGC--CGCGGCGGCCg-GU- -5'
21205 3' -65.5 NC_004778.3 + 117444 0.66 0.474048
Target:  5'- -aAGCggCGGCGCGGCaGCgGCCuGCCAc -3'
miRNA:   3'- ggUCGg-GCUGUGCCG-CGgCGGcCGGU- -5'
21205 3' -65.5 NC_004778.3 + 82668 0.66 0.474048
Target:  5'- --cGCuuGGCGCgGGCGCCaaGCC-GCCAa -3'
miRNA:   3'- gguCGggCUGUG-CCGCGG--CGGcCGGU- -5'
21205 3' -65.5 NC_004778.3 + 96600 0.66 0.474048
Target:  5'- gCUAGCCa-GCGCGGCgGCCGCUaGCgCGa -3'
miRNA:   3'- -GGUCGGgcUGUGCCG-CGGCGGcCG-GU- -5'
21205 3' -65.5 NC_004778.3 + 45590 0.66 0.46259
Target:  5'- uCCAgcGCCUGGCGCGccuucugcauagccGCGCCcucgucGCCGGCg- -3'
miRNA:   3'- -GGU--CGGGCUGUGC--------------CGCGG------CGGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 15079 0.66 0.456481
Target:  5'- gCCGGCCuCGccCGCGGCGC-GCagGGUCAa -3'
miRNA:   3'- -GGUCGG-GCu-GUGCCGCGgCGg-CCGGU- -5'
21205 3' -65.5 NC_004778.3 + 47709 0.66 0.455612
Target:  5'- gCCGcGCCgGAUAUcgcaGGCGCCGCuacuaagCGGUCAu -3'
miRNA:   3'- -GGU-CGGgCUGUG----CCGCGGCG-------GCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 33069 0.66 0.447829
Target:  5'- -gAGCCUGGCgcaacggugcaGCGGCccGCUGCCGcGCUAc -3'
miRNA:   3'- ggUCGGGCUG-----------UGCCG--CGGCGGC-CGGU- -5'
21205 3' -65.5 NC_004778.3 + 33661 0.66 0.447829
Target:  5'- gCAGCgCGGC-CGGCGCgcUGCCGcGCgGa -3'
miRNA:   3'- gGUCGgGCUGuGCCGCG--GCGGC-CGgU- -5'
21205 3' -65.5 NC_004778.3 + 85715 0.66 0.446969
Target:  5'- aUguGuCCCGGCGCGGCGCCcCCGuaauuaaGCUu -3'
miRNA:   3'- -GguC-GGGCUGUGCCGCGGcGGC-------CGGu -5'
21205 3' -65.5 NC_004778.3 + 68072 0.66 0.439269
Target:  5'- cUCAGCgaCGACGCgccGGCGCCGuCCGcacaugaaGCCGa -3'
miRNA:   3'- -GGUCGg-GCUGUG---CCGCGGC-GGC--------CGGU- -5'
21205 3' -65.5 NC_004778.3 + 32790 0.67 0.430804
Target:  5'- aCuGCgCGaACAUGGaGUCGCUGGCCAu -3'
miRNA:   3'- gGuCGgGC-UGUGCCgCGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 101644 0.67 0.430804
Target:  5'- gCGGCCCGugcAUGCGGUGCagCGCgGGCa- -3'
miRNA:   3'- gGUCGGGC---UGUGCCGCG--GCGgCCGgu -5'
21205 3' -65.5 NC_004778.3 + 119165 0.67 0.414163
Target:  5'- --cGCCUuuGCAauGCGCCGCCGGUCc -3'
miRNA:   3'- gguCGGGc-UGUgcCGCGGCGGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 100097 0.67 0.414163
Target:  5'- aCAGCCgcuUGGCGCaccccaGCGCgCGCCGcGCCAc -3'
miRNA:   3'- gGUCGG---GCUGUGc-----CGCG-GCGGC-CGGU- -5'
21205 3' -65.5 NC_004778.3 + 8005 0.67 0.414163
Target:  5'- gCGGCgCCGACgGCGGCGaca-CGGCCGa -3'
miRNA:   3'- gGUCG-GGCUG-UGCCGCggcgGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 10683 0.67 0.414163
Target:  5'- gCCaAGCCCGACGaugaaGGCGCCa-CGGUa- -3'
miRNA:   3'- -GG-UCGGGCUGUg----CCGCGGcgGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 33695 0.67 0.403562
Target:  5'- cCCGGCgCGGCuccaaaucuugaugGCGGgGCCGUcgCGGCUg -3'
miRNA:   3'- -GGUCGgGCUG--------------UGCCgCGGCG--GCCGGu -5'
21205 3' -65.5 NC_004778.3 + 108426 0.67 0.397925
Target:  5'- gCAGgUgGACGCGcugguGCGCCGCgGGCUg -3'
miRNA:   3'- gGUCgGgCUGUGC-----CGCGGCGgCCGGu -5'
21205 3' -65.5 NC_004778.3 + 110134 0.67 0.38996
Target:  5'- gCCGGUCCGuAUACGGCacagugcaGCUGCCGuaCGa -3'
miRNA:   3'- -GGUCGGGC-UGUGCCG--------CGGCGGCcgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.