miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 3' -55.7 NC_004778.3 + 21130 0.66 0.890404
Target:  5'- uCGCCgACGUgcCGcuCUGCGGCGUCGGGa -3'
miRNA:   3'- uGCGG-UGCAa-GCu-GACGCUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 118106 0.66 0.890404
Target:  5'- uCGCCAUcgaggaGUuugacaaaaUCGGCgGCGGCGCCGGu -3'
miRNA:   3'- uGCGGUG------CA---------AGCUGaCGCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 85285 0.66 0.890404
Target:  5'- uCGCCcaaGUUCGGCcguuuuUGCucGGCGCCAAAg -3'
miRNA:   3'- uGCGGug-CAAGCUG------ACG--CUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 49399 0.66 0.88833
Target:  5'- aGCGCCGCGUacUCGguauACUGCuGAaacauguauugcgcCGCCGAc -3'
miRNA:   3'- -UGCGGUGCA--AGC----UGACG-CU--------------GCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 27678 0.66 0.883409
Target:  5'- uACGCUuCGggcaCGACgaGCGugGCCAGu -3'
miRNA:   3'- -UGCGGuGCaa--GCUGa-CGCugCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 38078 0.66 0.868727
Target:  5'- aAUGCCGCug-CGGC-GCGACGCgCAAc -3'
miRNA:   3'- -UGCGGUGcaaGCUGaCGCUGCG-GUUu -5'
21212 3' -55.7 NC_004778.3 + 44316 0.66 0.868727
Target:  5'- cAUGCC-CGccagCGACgaGCGGCGCCGc- -3'
miRNA:   3'- -UGCGGuGCaa--GCUGa-CGCUGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 119555 0.66 0.868727
Target:  5'- cGCGCC-CGggCGGCacuuugGCGGCGCguAAg -3'
miRNA:   3'- -UGCGGuGCaaGCUGa-----CGCUGCGguUU- -5'
21212 3' -55.7 NC_004778.3 + 2511 0.66 0.861051
Target:  5'- aGCGCaGCGUggccgaagugcUCGACuuguccagcaUGCGGCGCCGc- -3'
miRNA:   3'- -UGCGgUGCA-----------AGCUG----------ACGCUGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 62022 0.66 0.861051
Target:  5'- gAUGUCuGCGgacgcCGAgaGCGGCGCCAAAa -3'
miRNA:   3'- -UGCGG-UGCaa---GCUgaCGCUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 93176 0.66 0.85316
Target:  5'- gGC-CCGCGUugUUGACcGCGuugGCGCCAAAa -3'
miRNA:   3'- -UGcGGUGCA--AGCUGaCGC---UGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 100642 0.66 0.85316
Target:  5'- cCGCgGCGUUUccUUGCGAUGCUAAAa -3'
miRNA:   3'- uGCGgUGCAAGcuGACGCUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 38296 0.66 0.85316
Target:  5'- uGCGCCAgCGcgcacgCGACcGCG-CGCCGAGc -3'
miRNA:   3'- -UGCGGU-GCaa----GCUGaCGCuGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 49329 0.66 0.85316
Target:  5'- gGCGCCGCacaaCGugUGCGGCaCCAc- -3'
miRNA:   3'- -UGCGGUGcaa-GCugACGCUGcGGUuu -5'
21212 3' -55.7 NC_004778.3 + 117076 0.67 0.836761
Target:  5'- cAUGUUuCGUUCGACUGUGACcaCCAGGu -3'
miRNA:   3'- -UGCGGuGCAAGCUGACGCUGc-GGUUU- -5'
21212 3' -55.7 NC_004778.3 + 38102 0.67 0.828266
Target:  5'- aGCGUCuccacagacGCGUUgaCGugUGCGuGCGCCAAAu -3'
miRNA:   3'- -UGCGG---------UGCAA--GCugACGC-UGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 115163 0.67 0.819586
Target:  5'- -gGCCACGUU-GACUucGCGGC-CCAAAa -3'
miRNA:   3'- ugCGGUGCAAgCUGA--CGCUGcGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 128451 0.67 0.819586
Target:  5'- cCGCCACGcgUUGgaggccGCUGCuGCGCCGAu -3'
miRNA:   3'- uGCGGUGCa-AGC------UGACGcUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 83113 0.67 0.819586
Target:  5'- cGCGCCGCGaUCGACUGguuacccaaCGugGUgAGg -3'
miRNA:   3'- -UGCGGUGCaAGCUGAC---------GCugCGgUUu -5'
21212 3' -55.7 NC_004778.3 + 113892 0.67 0.810729
Target:  5'- gGCGCguCGggCGAagGCGGCGCCGc- -3'
miRNA:   3'- -UGCGguGCaaGCUgaCGCUGCGGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.