miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 5' -56.2 NC_004778.3 + 90092 0.66 0.870051
Target:  5'- gUGCAguacuuuguGGGCAcGG-UGCUGAGCaGCGUUa -3'
miRNA:   3'- -ACGU---------UCCGUaCCuGCGGCUUG-CGCAG- -5'
21212 5' -56.2 NC_004778.3 + 98101 0.66 0.870051
Target:  5'- gGCAaaauAGGCAaGGuCGCUGcGCGCG-Ca -3'
miRNA:   3'- aCGU----UCCGUaCCuGCGGCuUGCGCaG- -5'
21212 5' -56.2 NC_004778.3 + 38757 0.66 0.870051
Target:  5'- cGCu-GGC-UGGgcACGCCGAGaaguacgcaGCGUCg -3'
miRNA:   3'- aCGuuCCGuACC--UGCGGCUUg--------CGCAG- -5'
21212 5' -56.2 NC_004778.3 + 36018 0.66 0.870051
Target:  5'- gGCGGGcaacgccauccGCAUGGGCguGCCGuACGUGUa -3'
miRNA:   3'- aCGUUC-----------CGUACCUG--CGGCuUGCGCAg -5'
21212 5' -56.2 NC_004778.3 + 101836 0.66 0.867794
Target:  5'- cGCGuuuGGCAUGcGuuuccgaaaguaguACGCCGGugGCG-Cg -3'
miRNA:   3'- aCGUu--CCGUAC-C--------------UGCGGCUugCGCaG- -5'
21212 5' -56.2 NC_004778.3 + 43123 0.66 0.862452
Target:  5'- cGCAAGcGCuucgacGGCGCCGcGGCGCGcCg -3'
miRNA:   3'- aCGUUC-CGuac---CUGCGGC-UUGCGCaG- -5'
21212 5' -56.2 NC_004778.3 + 109567 0.66 0.862452
Target:  5'- cUGCGAGGUc--GGCGCCG-ACGCa-- -3'
miRNA:   3'- -ACGUUCCGuacCUGCGGCuUGCGcag -5'
21212 5' -56.2 NC_004778.3 + 80646 0.66 0.862452
Target:  5'- cGCgGAGGaCGUGGGCGUgggagaCGGugGCGcCg -3'
miRNA:   3'- aCG-UUCC-GUACCUGCG------GCUugCGCaG- -5'
21212 5' -56.2 NC_004778.3 + 26527 0.66 0.860131
Target:  5'- --aAAGGCAaguUGGGCGCCGGcaaguauuucgcuaGCGUGg- -3'
miRNA:   3'- acgUUCCGU---ACCUGCGGCU--------------UGCGCag -5'
21212 5' -56.2 NC_004778.3 + 7039 0.66 0.854639
Target:  5'- aGCGAGGUc--GGCGCUGAcgcACGCGa- -3'
miRNA:   3'- aCGUUCCGuacCUGCGGCU---UGCGCag -5'
21212 5' -56.2 NC_004778.3 + 34918 0.66 0.838398
Target:  5'- cGCAAGcGCAUGGcauuguGCGCgGcg-GCGUCg -3'
miRNA:   3'- aCGUUC-CGUACC------UGCGgCuugCGCAG- -5'
21212 5' -56.2 NC_004778.3 + 62759 0.66 0.838398
Target:  5'- aGCGAGGUc--GGCGCCG-ACGCacGUCc -3'
miRNA:   3'- aCGUUCCGuacCUGCGGCuUGCG--CAG- -5'
21212 5' -56.2 NC_004778.3 + 58387 0.66 0.838398
Target:  5'- gUGCAGcGGC-UGGACGCgGccuCGCGa- -3'
miRNA:   3'- -ACGUU-CCGuACCUGCGgCuu-GCGCag -5'
21212 5' -56.2 NC_004778.3 + 109412 0.66 0.838398
Target:  5'- aGCGAGGUc--GGCGCCG-ACGCacGUCc -3'
miRNA:   3'- aCGUUCCGuacCUGCGGCuUGCG--CAG- -5'
21212 5' -56.2 NC_004778.3 + 89884 0.67 0.829984
Target:  5'- gGUuAGGCuGUGGACGuuGGuGCGCGa- -3'
miRNA:   3'- aCGuUCCG-UACCUGCggCU-UGCGCag -5'
21212 5' -56.2 NC_004778.3 + 95683 0.67 0.829984
Target:  5'- gGC-AGGUGUGGACGgCCGAGa-CGUUu -3'
miRNA:   3'- aCGuUCCGUACCUGC-GGCUUgcGCAG- -5'
21212 5' -56.2 NC_004778.3 + 73469 0.67 0.821384
Target:  5'- aUGCAGGaCGUGGGCGgCGAcaugUGCGUg -3'
miRNA:   3'- -ACGUUCcGUACCUGCgGCUu---GCGCAg -5'
21212 5' -56.2 NC_004778.3 + 119931 0.67 0.821384
Target:  5'- aGCAGGGCAUcGAuauucCGCCGcACGUGa- -3'
miRNA:   3'- aCGUUCCGUAcCU-----GCGGCuUGCGCag -5'
21212 5' -56.2 NC_004778.3 + 71211 0.67 0.821384
Target:  5'- gGCGAGG-GUGu-CGCCGAGgGCGUa -3'
miRNA:   3'- aCGUUCCgUACcuGCGGCUUgCGCAg -5'
21212 5' -56.2 NC_004778.3 + 77381 0.67 0.812607
Target:  5'- gUGCAAuGCGcacGCGCCGGcCGCGUCg -3'
miRNA:   3'- -ACGUUcCGUaccUGCGGCUuGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.