miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 30721 0.66 0.825251
Target:  5'- cACGcUGCGGcCGCgGCCGGCUgccaucgaaaguucgCGUCGc -3'
miRNA:   3'- -UGCuGCGCCuGUGgUGGUCGA---------------GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 121580 0.66 0.821891
Target:  5'- --aACGUGGGCGCCACCGcGCUUa--- -3'
miRNA:   3'- ugcUGCGCCUGUGGUGGU-CGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 14508 0.66 0.821891
Target:  5'- -aGGcCGCGGuGCGCaCGCCGGCUUG-CGc -3'
miRNA:   3'- ugCU-GCGCC-UGUG-GUGGUCGAGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 113901 0.66 0.813376
Target:  5'- gGCGAagGCGG-CGCCGCgGGUUCcUCGc -3'
miRNA:   3'- -UGCUg-CGCCuGUGGUGgUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 1654 0.66 0.813376
Target:  5'- aGCGACGCGucguuGGCACCuuCGGUUUGggugCGg -3'
miRNA:   3'- -UGCUGCGC-----CUGUGGugGUCGAGCa---GC- -5'
21219 3' -58.2 NC_004778.3 + 10068 0.66 0.813376
Target:  5'- cCGACGCaGuaaACugCGCCAGCUCa--- -3'
miRNA:   3'- uGCUGCGcC---UGugGUGGUCGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 52856 0.66 0.8047
Target:  5'- aGCGAaaaUGCGGAgGCCAUuCAGCUUGa-- -3'
miRNA:   3'- -UGCU---GCGCCUgUGGUG-GUCGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 8483 0.66 0.8047
Target:  5'- -gGGCGCGGcccGCGCCccGCCAGUcaUCGUa- -3'
miRNA:   3'- ugCUGCGCC---UGUGG--UGGUCG--AGCAgc -5'
21219 3' -58.2 NC_004778.3 + 113285 0.66 0.8047
Target:  5'- cGCGACGCGcACGUCGCaCAGCgaGUCGa -3'
miRNA:   3'- -UGCUGCGCcUGUGGUG-GUCGagCAGC- -5'
21219 3' -58.2 NC_004778.3 + 43856 0.66 0.795872
Target:  5'- cCGACGCGGcaACAgguGCCGGCUCGg-- -3'
miRNA:   3'- uGCUGCGCC--UGUgg-UGGUCGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 88709 0.66 0.795872
Target:  5'- aGCGGCGCGuGCGCUcCCaauugAGCUUGUUGu -3'
miRNA:   3'- -UGCUGCGCcUGUGGuGG-----UCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 103660 0.66 0.7869
Target:  5'- aGCGugGCGGcaACGCgGUCAGCUUaUCGa -3'
miRNA:   3'- -UGCugCGCC--UGUGgUGGUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 97165 0.66 0.7869
Target:  5'- cCGACaCGG-CGCCGCCGGCcagCGUgCGc -3'
miRNA:   3'- uGCUGcGCCuGUGGUGGUCGa--GCA-GC- -5'
21219 3' -58.2 NC_004778.3 + 82612 0.66 0.7869
Target:  5'- gAUGAgGCGGcgaGCCGCCGcGCgauagCGUCGc -3'
miRNA:   3'- -UGCUgCGCCug-UGGUGGU-CGa----GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 97402 0.67 0.777793
Target:  5'- gGCGGCGCgcaaGGAaGCCGCCGGUUCu--- -3'
miRNA:   3'- -UGCUGCG----CCUgUGGUGGUCGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 91332 0.67 0.759206
Target:  5'- -gGACGCGGACggcguGCgCGCUAGCgugcuguugcgCGUCGc -3'
miRNA:   3'- ugCUGCGCCUG-----UG-GUGGUCGa----------GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 89888 0.67 0.759206
Target:  5'- aGCGugGUGGGCGCaAgCGGCUUG-CGc -3'
miRNA:   3'- -UGCugCGCCUGUGgUgGUCGAGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 16927 0.67 0.748793
Target:  5'- cGCGAgccguuaCGCGGcGCACaugCACCGGCUCGaguucUCGg -3'
miRNA:   3'- -UGCU-------GCGCC-UGUG---GUGGUCGAGC-----AGC- -5'
21219 3' -58.2 NC_004778.3 + 120697 0.67 0.740182
Target:  5'- gACGGgGUGGcGCGCCacggcGCCGGCggCGUCa -3'
miRNA:   3'- -UGCUgCGCC-UGUGG-----UGGUCGa-GCAGc -5'
21219 3' -58.2 NC_004778.3 + 80806 0.67 0.740182
Target:  5'- -aGACGCGGcaACgGCCGGUcgCGUCGc -3'
miRNA:   3'- ugCUGCGCCugUGgUGGUCGa-GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.