miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 3' -52 NC_004778.3 + 121710 0.66 0.977698
Target:  5'- cCGCGUCGgGCaCGuuGUcggcGCGCCGUa -3'
miRNA:   3'- uGUGCAGCgCGgGUuuUAu---UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 30271 0.66 0.980041
Target:  5'- gGCAUGUUGCgcaaguuuacGCCCAuc--AACGCCauGCg -3'
miRNA:   3'- -UGUGCAGCG----------CGGGUuuuaUUGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 27537 0.66 0.972412
Target:  5'- gACACGUUGCGCUUGGAcugGGCuaCCGUg -3'
miRNA:   3'- -UGUGCAGCGCGGGUUUua-UUGc-GGCG- -5'
21220 3' -52 NC_004778.3 + 91336 0.66 0.972412
Target:  5'- cACACGUcaaCGCGUCUguGGaGACGCUGUu -3'
miRNA:   3'- -UGUGCA---GCGCGGGuuUUaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 112192 0.66 0.975157
Target:  5'- uGCAcuuCGUUcucgGCGCCCucgcgcAUAGCGgCCGCg -3'
miRNA:   3'- -UGU---GCAG----CGCGGGuuu---UAUUGC-GGCG- -5'
21220 3' -52 NC_004778.3 + 28952 0.66 0.972412
Target:  5'- uGC-UGUCuaGCCCAAAGUAGCaUUGCa -3'
miRNA:   3'- -UGuGCAGcgCGGGUUUUAUUGcGGCG- -5'
21220 3' -52 NC_004778.3 + 38582 0.66 0.980041
Target:  5'- cGCGCaaCGCGUCCAcuAUGuuccgcaaaGCGCCGg -3'
miRNA:   3'- -UGUGcaGCGCGGGUuuUAU---------UGCGGCg -5'
21220 3' -52 NC_004778.3 + 58422 0.66 0.975157
Target:  5'- -aACG-CGCGUCCAAAAccuuuuGCGCCcuGCu -3'
miRNA:   3'- ugUGCaGCGCGGGUUUUau----UGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 25703 0.66 0.975157
Target:  5'- cGC-CGUCGCGCaCGAGGcAAUGCacaGCg -3'
miRNA:   3'- -UGuGCAGCGCGgGUUUUaUUGCGg--CG- -5'
21220 3' -52 NC_004778.3 + 27940 0.66 0.972412
Target:  5'- uGCGCa-CGCGUaucaCAAAAUGGCGCuCGUg -3'
miRNA:   3'- -UGUGcaGCGCGg---GUUUUAUUGCG-GCG- -5'
21220 3' -52 NC_004778.3 + 15678 0.66 0.980041
Target:  5'- aACACGaccaacaaCGUGCUCGAcGAUGgcGCGCUGCu -3'
miRNA:   3'- -UGUGCa-------GCGCGGGUU-UUAU--UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 106140 0.66 0.980041
Target:  5'- gGCACcUCGUGCCCGuuuc--CGCCcgGCa -3'
miRNA:   3'- -UGUGcAGCGCGGGUuuuauuGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 21094 0.66 0.975157
Target:  5'- aGCGCGgUGCaGCCCGcggAGcgGACGuuGCc -3'
miRNA:   3'- -UGUGCaGCG-CGGGU---UUuaUUGCggCG- -5'
21220 3' -52 NC_004778.3 + 52297 0.66 0.972412
Target:  5'- -gGCGUUGUGCaaAAAcuuGUccAGCGCCGCu -3'
miRNA:   3'- ugUGCAGCGCGggUUU---UA--UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 33392 0.66 0.971547
Target:  5'- uUugGaCGCGCCCAAccuguuggagcaccAGaAACGCgGCa -3'
miRNA:   3'- uGugCaGCGCGGGUU--------------UUaUUGCGgCG- -5'
21220 3' -52 NC_004778.3 + 23521 0.66 0.971837
Target:  5'- aACGCGUaucgaaucgccgGCGCgCAAGuauAUGCCGCa -3'
miRNA:   3'- -UGUGCAg-----------CGCGgGUUUuauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 113788 0.66 0.972412
Target:  5'- -gGCGUUGUGCgugaaCCGAGcUGAUGCCGg -3'
miRNA:   3'- ugUGCAGCGCG-----GGUUUuAUUGCGGCg -5'
21220 3' -52 NC_004778.3 + 93086 0.66 0.978658
Target:  5'- gUugGUCGCGCUgCAAAAuccauuaucgcaagcUAAauugcuCGCCGCg -3'
miRNA:   3'- uGugCAGCGCGG-GUUUU---------------AUU------GCGGCG- -5'
21220 3' -52 NC_004778.3 + 45575 0.66 0.980041
Target:  5'- cGCACGUaGCGCUCcucc-AGCGCCugGCg -3'
miRNA:   3'- -UGUGCAgCGCGGGuuuuaUUGCGG--CG- -5'
21220 3' -52 NC_004778.3 + 9053 0.66 0.977698
Target:  5'- aAC-CGcCGCGCUCGA----GCGCCGg -3'
miRNA:   3'- -UGuGCaGCGCGGGUUuuauUGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.