miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 3' -52 NC_004778.3 + 82063 1.13 0.003388
Target:  5'- gACACGUCGCGCCCAAAAUAACGCCGCa -3'
miRNA:   3'- -UGUGCAGCGCGGGUUUUAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 55977 0.95 0.045491
Target:  5'- cGCAUGUCGCGCUCGGAcaGUGGCGCCGCg -3'
miRNA:   3'- -UGUGCAGCGCGGGUUU--UAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 64154 0.85 0.18772
Target:  5'- aGCGCGUCGCGCCC-----GugGCCGCc -3'
miRNA:   3'- -UGUGCAGCGCGGGuuuuaUugCGGCG- -5'
21220 3' -52 NC_004778.3 + 107766 0.82 0.287593
Target:  5'- cCGCGUCGCGCUCGucgggGGCGUCGCg -3'
miRNA:   3'- uGUGCAGCGCGGGUuuua-UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 13591 0.82 0.301761
Target:  5'- aACACGaaCGCGCCCGAAcaaaccgcGUAgaGCGCCGCg -3'
miRNA:   3'- -UGUGCa-GCGCGGGUUU--------UAU--UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 60516 0.82 0.311996
Target:  5'- cGCAUGccCGUGCCCAGcauuaugcaaaauacGAUGGCGCCGCg -3'
miRNA:   3'- -UGUGCa-GCGCGGGUU---------------UUAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 4963 0.81 0.330923
Target:  5'- gGCGCGggccuuaUCGCGCCUAuAAAUAAgGCCGCa -3'
miRNA:   3'- -UGUGC-------AGCGCGGGU-UUUAUUgCGGCG- -5'
21220 3' -52 NC_004778.3 + 10672 0.8 0.375478
Target:  5'- cCGCGcCGCGCCCGAAgcGUGgcacguguugaguguGCGCCGCc -3'
miRNA:   3'- uGUGCaGCGCGGGUUU--UAU---------------UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 120967 0.79 0.415733
Target:  5'- gGCGCGggcCGCGCCCGcugccccGGCGCCGCc -3'
miRNA:   3'- -UGUGCa--GCGCGGGUuuua---UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 110304 0.79 0.434042
Target:  5'- -aAUGUCGUGUUCGAAAcAGCGCCGCu -3'
miRNA:   3'- ugUGCAGCGCGGGUUUUaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 13474 0.78 0.452809
Target:  5'- aACACGUaCGgGCCCAGuaggAACGCCGa -3'
miRNA:   3'- -UGUGCA-GCgCGGGUUuua-UUGCGGCg -5'
21220 3' -52 NC_004778.3 + 118974 0.78 0.466206
Target:  5'- gGCGcCGUuccCGCGCCCGAuuuaaauaaauaaacGAUAACGCCGUu -3'
miRNA:   3'- -UGU-GCA---GCGCGGGUU---------------UUAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 80119 0.78 0.481764
Target:  5'- cACACGUugugcggcgcCGCGUCCAAugaccGCGCCGCg -3'
miRNA:   3'- -UGUGCA----------GCGCGGGUUuuau-UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 5133 0.77 0.511586
Target:  5'- -gACGcCGUGCCCAcgccGGCGCCGCg -3'
miRNA:   3'- ugUGCaGCGCGGGUuuuaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 59425 0.77 0.542146
Target:  5'- -gACGgauGCGCgCCAGAAUGGCGUCGCu -3'
miRNA:   3'- ugUGCag-CGCG-GGUUUUAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 17111 0.76 0.55247
Target:  5'- cGCGCGgCGCGCCUAccGUGgcaACGCCGUu -3'
miRNA:   3'- -UGUGCaGCGCGGGUuuUAU---UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 25165 0.76 0.55247
Target:  5'- uGCACGUUcuugcgGCGCagaCAAGGUuGCGCCGCu -3'
miRNA:   3'- -UGUGCAG------CGCGg--GUUUUAuUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 59368 0.76 0.562853
Target:  5'- cGCACaaCGCGUCCAGGuUGGCGCCGg -3'
miRNA:   3'- -UGUGcaGCGCGGGUUUuAUUGCGGCg -5'
21220 3' -52 NC_004778.3 + 119530 0.76 0.573287
Target:  5'- aACGCGUCaucaaGCCCAAAAU-GCGCCaGCg -3'
miRNA:   3'- -UGUGCAGcg---CGGGUUUUAuUGCGG-CG- -5'
21220 3' -52 NC_004778.3 + 25306 0.75 0.636562
Target:  5'- uCGCG-C-CGCCCAAAGaGACGCUGCa -3'
miRNA:   3'- uGUGCaGcGCGGGUUUUaUUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.