miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 3' -52 NC_004778.3 + 1089 0.67 0.962873
Target:  5'- gGCAUGUCGgGCCUuu--UAGCG-UGCg -3'
miRNA:   3'- -UGUGCAGCgCGGGuuuuAUUGCgGCG- -5'
21220 3' -52 NC_004778.3 + 1503 0.7 0.867242
Target:  5'- uACAUGUUGC-CCCGcgg-GGCGCUGCc -3'
miRNA:   3'- -UGUGCAGCGcGGGUuuuaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 1626 0.74 0.678778
Target:  5'- cACACGUUGCGCUUgcu---GCGCUGCg -3'
miRNA:   3'- -UGUGCAGCGCGGGuuuuauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 1633 0.75 0.636562
Target:  5'- uGCGCGUCaGCGUCaCAAA---AUGCCGCg -3'
miRNA:   3'- -UGUGCAG-CGCGG-GUUUuauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 2240 0.72 0.770382
Target:  5'- -aACGUCaCGCCCGcggacguACGCCGCu -3'
miRNA:   3'- ugUGCAGcGCGGGUuuuau--UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 2390 0.7 0.88221
Target:  5'- gGCACGcUCGaguacuuuaGCCCGGAAaaaauuCGCCGCc -3'
miRNA:   3'- -UGUGC-AGCg--------CGGGUUUUauu---GCGGCG- -5'
21220 3' -52 NC_004778.3 + 2434 0.7 0.874842
Target:  5'- uGCGCGUuaccUGUgGCCCGAGugcggcACGCCGCu -3'
miRNA:   3'- -UGUGCA----GCG-CGGGUUUuau---UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 4871 0.7 0.88221
Target:  5'- uGCGCG-CGCGCCUAcgugacucGGCGCgCGCu -3'
miRNA:   3'- -UGUGCaGCGCGGGUuuua----UUGCG-GCG- -5'
21220 3' -52 NC_004778.3 + 4963 0.81 0.330923
Target:  5'- gGCGCGggccuuaUCGCGCCUAuAAAUAAgGCCGCa -3'
miRNA:   3'- -UGUGC-------AGCGCGGGU-UUUAUUgCGGCG- -5'
21220 3' -52 NC_004778.3 + 5133 0.77 0.511586
Target:  5'- -gACGcCGUGCCCAcgccGGCGCCGCg -3'
miRNA:   3'- ugUGCaGCGCGGGUuuuaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 6814 0.68 0.941799
Target:  5'- uCACGUCGCGCggaaacaCCAcGAcgGGCGCCc- -3'
miRNA:   3'- uGUGCAGCGCG-------GGU-UUuaUUGCGGcg -5'
21220 3' -52 NC_004778.3 + 7064 0.67 0.954963
Target:  5'- aACACGuccuccuUCGCGUCCAAcggcAACuGCUGCa -3'
miRNA:   3'- -UGUGC-------AGCGCGGGUUuua-UUG-CGGCG- -5'
21220 3' -52 NC_004778.3 + 8699 0.69 0.917786
Target:  5'- uACAaaUCGCGCcggguuacgguuuggCCGAGAacuuUGACGCCGCc -3'
miRNA:   3'- -UGUgcAGCGCG---------------GGUUUU----AUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 8811 0.73 0.760595
Target:  5'- -gGCGggCGCGCUCAgcGAAUGGCGCCu- -3'
miRNA:   3'- ugUGCa-GCGCGGGU--UUUAUUGCGGcg -5'
21220 3' -52 NC_004778.3 + 9053 0.66 0.977698
Target:  5'- aAC-CGcCGCGCUCGA----GCGCCGg -3'
miRNA:   3'- -UGuGCaGCGCGGGUUuuauUGCGGCg -5'
21220 3' -52 NC_004778.3 + 9521 0.69 0.90287
Target:  5'- cGCGCGUaucgacgauuugCGCGCCguuuuGGAAcacGACGCCGCg -3'
miRNA:   3'- -UGUGCA------------GCGCGGg----UUUUa--UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 9838 0.7 0.892125
Target:  5'- aACACGUCGcCguacauauggagaccGCCCAAAuauUGgcuccuuacGCGCCGCc -3'
miRNA:   3'- -UGUGCAGC-G---------------CGGGUUUu--AU---------UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 10475 0.73 0.730547
Target:  5'- gGCGCGggaacgGCGCCCAAuaaGACGCUGUu -3'
miRNA:   3'- -UGUGCag----CGCGGGUUuuaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 10672 0.8 0.375478
Target:  5'- cCGCGcCGCGCCCGAAgcGUGgcacguguugaguguGCGCCGCc -3'
miRNA:   3'- uGUGCaGCGCGGGUUU--UAU---------------UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 13310 0.7 0.896228
Target:  5'- -aAUGUUGUGuCCCAcaAAGU-GCGCCGCc -3'
miRNA:   3'- ugUGCAGCGC-GGGU--UUUAuUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.