miRNA display CGI


Results 1 - 20 of 255 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 3' -52 NC_004778.3 + 103416 0.73 0.750687
Target:  5'- gACACGUCGUGCCgCcauguuGGcgGACGuuGCu -3'
miRNA:   3'- -UGUGCAGCGCGG-Gu-----UUuaUUGCggCG- -5'
21220 3' -52 NC_004778.3 + 34461 0.74 0.675627
Target:  5'- uGCGCGUCgaggaGCGCaccgcggucgagaaCCAGuuUAACGCCGCc -3'
miRNA:   3'- -UGUGCAG-----CGCG--------------GGUUuuAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 1626 0.74 0.678778
Target:  5'- cACACGUUGCGCUUgcu---GCGCUGCg -3'
miRNA:   3'- -UGUGCAGCGCGGGuuuuauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 113892 0.74 0.678778
Target:  5'- gGCGCGUCGgG-CgAAGGcGGCGCCGCg -3'
miRNA:   3'- -UGUGCAGCgCgGgUUUUaUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 74827 0.73 0.720334
Target:  5'- cCGCcUUGCGCCCGuagucGGUGGCGCCGa -3'
miRNA:   3'- uGUGcAGCGCGGGUu----UUAUUGCGGCg -5'
21220 3' -52 NC_004778.3 + 106287 0.73 0.730547
Target:  5'- uGCAauCGUCaGCGCCCGugcc--CGCCGCa -3'
miRNA:   3'- -UGU--GCAG-CGCGGGUuuuauuGCGGCG- -5'
21220 3' -52 NC_004778.3 + 85270 0.73 0.730547
Target:  5'- uACACGgcgccCGCGUCCAugccguCGCCGCc -3'
miRNA:   3'- -UGUGCa----GCGCGGGUuuuauuGCGGCG- -5'
21220 3' -52 NC_004778.3 + 116642 0.73 0.740668
Target:  5'- aACGCGUuuuaCGCGCCCAAAcu-GCGCauucucaGCa -3'
miRNA:   3'- -UGUGCA----GCGCGGGUUUuauUGCGg------CG- -5'
21220 3' -52 NC_004778.3 + 75635 0.73 0.750687
Target:  5'- cGCACucgCGCGUCCAAcuUGcACGCUGCg -3'
miRNA:   3'- -UGUGca-GCGCGGGUUuuAU-UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 32138 0.75 0.657714
Target:  5'- uGCACGaCgGCGCuCCAAu---GCGCCGCg -3'
miRNA:   3'- -UGUGCaG-CGCG-GGUUuuauUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 85417 0.75 0.657714
Target:  5'- uACACGUCGC-CCaCGcguAUGACGUCGCc -3'
miRNA:   3'- -UGUGCAGCGcGG-GUuu-UAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 119530 0.76 0.573287
Target:  5'- aACGCGUCaucaaGCCCAAAAU-GCGCCaGCg -3'
miRNA:   3'- -UGUGCAGcg---CGGGUUUUAuUGCGG-CG- -5'
21220 3' -52 NC_004778.3 + 107766 0.82 0.287593
Target:  5'- cCGCGUCGCGCUCGucgggGGCGUCGCg -3'
miRNA:   3'- uGUGCAGCGCGGGUuuua-UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 13591 0.82 0.301761
Target:  5'- aACACGaaCGCGCCCGAAcaaaccgcGUAgaGCGCCGCg -3'
miRNA:   3'- -UGUGCa-GCGCGGGUUU--------UAU--UGCGGCG- -5'
21220 3' -52 NC_004778.3 + 60516 0.82 0.311996
Target:  5'- cGCAUGccCGUGCCCAGcauuaugcaaaauacGAUGGCGCCGCg -3'
miRNA:   3'- -UGUGCa-GCGCGGGUU---------------UUAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 120967 0.79 0.415733
Target:  5'- gGCGCGggcCGCGCCCGcugccccGGCGCCGCc -3'
miRNA:   3'- -UGUGCa--GCGCGGGUuuua---UUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 13474 0.78 0.452809
Target:  5'- aACACGUaCGgGCCCAGuaggAACGCCGa -3'
miRNA:   3'- -UGUGCA-GCgCGGGUUuua-UUGCGGCg -5'
21220 3' -52 NC_004778.3 + 118974 0.78 0.466206
Target:  5'- gGCGcCGUuccCGCGCCCGAuuuaaauaaauaaacGAUAACGCCGUu -3'
miRNA:   3'- -UGU-GCA---GCGCGGGUU---------------UUAUUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 25165 0.76 0.55247
Target:  5'- uGCACGUUcuugcgGCGCagaCAAGGUuGCGCCGCu -3'
miRNA:   3'- -UGUGCAG------CGCGg--GUUUUAuUGCGGCG- -5'
21220 3' -52 NC_004778.3 + 17111 0.76 0.55247
Target:  5'- cGCGCGgCGCGCCUAccGUGgcaACGCCGUu -3'
miRNA:   3'- -UGUGCaGCGCGGGUuuUAU---UGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.