miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 125069 0.76 0.721854
Target:  5'- cGCUGACGCAUGUCUGA----GGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 125005 0.66 0.99612
Target:  5'- -aUGACGCAUGUCUGA----GGCAUUc -3'
miRNA:   3'- cgGCUGCGUGCAGAUUucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 124947 0.76 0.721854
Target:  5'- cGCUGACGCAUGUCUGA----GGUACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122867 0.98 0.04942
Target:  5'- cGCCGACGCA-GUCUAAAGAUAGCACUu -3'
miRNA:   3'- -CGGCUGCGUgCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122849 0.69 0.974806
Target:  5'- cGuuGACGCAUGUCUAAGGGa------ -3'
miRNA:   3'- -CggCUGCGUGCAGAUUUCUaucguga -5'
21234 3' -49.7 NC_004778.3 + 122802 0.79 0.561276
Target:  5'- cGCUGACGCACGUUUA----UAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122793 0.69 0.968922
Target:  5'- cGCUGACGCAUGUCU------GGCAUUu -3'
miRNA:   3'- -CGGCUGCGUGCAGAuuucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122754 0.84 0.318931
Target:  5'- cGCUGACGCACGUCUA----UAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122692 0.84 0.318931
Target:  5'- cGCUGACGCACGUCUA----UAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUuucuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122599 0.94 0.08713
Target:  5'- cGCCGACGCACGUCUAAAGAUAaaACUa -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUcgUGA- -5'
21234 3' -49.7 NC_004778.3 + 122446 1.06 0.015098
Target:  5'- cGCUGACGCACGUCUAAAGAUAGCACUu -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 122386 0.82 0.420891
Target:  5'- gGUCGGCGC-CGUCUAAAGAUAaCACUa -3'
miRNA:   3'- -CGGCUGCGuGCAGAUUUCUAUcGUGA- -5'
21234 3' -49.7 NC_004778.3 + 115145 0.66 0.995444
Target:  5'- cGCCaGCGCGgGUCaUAAuguGGUGGUGCUc -3'
miRNA:   3'- -CGGcUGCGUgCAG-AUUu--CUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 113887 0.71 0.930428
Target:  5'- gGCCGG-GCGCGUCgggcGAAGGcGGCGCc -3'
miRNA:   3'- -CGGCUgCGUGCAGa---UUUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 112224 0.67 0.98912
Target:  5'- gGCCG-CGCG-GUCcAGGuGAUAGCACg -3'
miRNA:   3'- -CGGCuGCGUgCAGaUUU-CUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 111298 0.69 0.968922
Target:  5'- cGCCGugGUgaGCGUUUu--GAUGGCAa- -3'
miRNA:   3'- -CGGCugCG--UGCAGAuuuCUAUCGUga -5'
21234 3' -49.7 NC_004778.3 + 106869 0.67 0.98912
Target:  5'- cGCCGACGCccugGCGUUaaagccgagGAGGAUcagacaaccgAGCGCUu -3'
miRNA:   3'- -CGGCUGCG----UGCAGa--------UUUCUA----------UCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 104354 0.68 0.982047
Target:  5'- gGCCGGCGUACGUgacucGGUcGGCGCg -3'
miRNA:   3'- -CGGCUGCGUGCAgauuuCUA-UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 99936 0.89 0.172948
Target:  5'- cGCUGGCGCAUGUCUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 99870 0.85 0.289327
Target:  5'- cGCUGACGCAUGUUUAAAaAUAGCACUc -3'
miRNA:   3'- -CGGCUGCGUGCAGAUUUcUAUCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.