miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 125222 0.69 0.876152
Target:  5'- uCGUaCUUGAAAAuCGGGGUCaGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUcGCUCCAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 125090 0.85 0.169015
Target:  5'- uGUaCUC-AAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGcUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 125029 0.83 0.218246
Target:  5'- uGUgUUCGGAAAGCGGGGUCGGCGa- -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCga -5'
21235 3' -53.2 NC_004778.3 + 124985 0.82 0.239368
Target:  5'- uCGuUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUU--------------UUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 124963 0.83 0.218246
Target:  5'- aCGUUCUCcAAAAGCGGGGUCGG-GCg -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCgCGa -5'
21235 3' -53.2 NC_004778.3 + 124255 0.7 0.810385
Target:  5'- gCGUUcCUCGGcAGGGCGAucGGcagcUCGGCGCg -3'
miRNA:   3'- -GCAA-GAGCU-UUUCGCU--CC----AGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122971 0.82 0.247185
Target:  5'- uCGUaCcCGAAAAGCGGGGUUGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122889 0.89 0.09674
Target:  5'- uGUaCUUGGAAAGCGGGGUCGGCGCc -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122827 0.75 0.54723
Target:  5'- uGUaCUUGGAAAGCGGGaUCGGCGUUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCcAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122825 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122780 0.9 0.084448
Target:  5'- uCGcUUUUCGAGAaaAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUUU--UCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122771 0.81 0.272565
Target:  5'- uGUaCUCGAAAAGUGGaGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGCUUUUCGCUcCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122715 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122699 0.66 0.953944
Target:  5'- uGUUCUCGAAaaacAAGUGcuaucuuuagacuGcGUCGGCGCc -3'
miRNA:   3'- gCAAGAGCUU----UUCGCu------------C-CAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122653 0.99 0.02284
Target:  5'- cCGUUCcCGAAAAGCGAGGUCGGCGCUu -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122638 0.71 0.750777
Target:  5'- -uUUCUCGAAAAGCGAGugcuauaaacgugcGUCaGCGCc -3'
miRNA:   3'- gcAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122589 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122567 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122527 0.78 0.427655
Target:  5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122469 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.