miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 45644 0.67 0.942617
Target:  5'- uGUcUUCGGAcAGCGAcGGUCcGCGCg -3'
miRNA:   3'- gCAaGAGCUUuUCGCU-CCAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122469 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19841 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66781 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 20040 0.68 0.910066
Target:  5'- aCGUaa--GAuagcacuGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAagagCUuuu----CGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122239 0.68 0.897223
Target:  5'- ---aCUUGAAAAGCGGGGUCaaUGCUg -3'
miRNA:   3'- gcaaGAGCUUUUCGCUCCAGccGCGA- -5'
21235 3' -53.2 NC_004778.3 + 117172 0.71 0.792081
Target:  5'- uGUUCguggUCGugccgguGGCGGGGUCGGUGUa -3'
miRNA:   3'- gCAAG----AGCuuu----UCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99437 0.72 0.742846
Target:  5'- gCGUUCUCGAAAAGCGAGcgcuaucuuauacGUgCGucaGCGCg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-------------CA-GC---CGCGa -5'
21235 3' -53.2 NC_004778.3 + 125090 0.85 0.169015
Target:  5'- uGUaCUC-AAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- gCAaGAGcUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66716 0.91 0.069718
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122344 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 125029 0.83 0.218246
Target:  5'- uGUgUUCGGAAAGCGGGGUCGGCGa- -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCga -5'
21235 3' -53.2 NC_004778.3 + 31403 0.67 0.937818
Target:  5'- -uUUCUCGGc--GCGAGGUgCGcGCGCc -3'
miRNA:   3'- gcAAGAGCUuuuCGCUCCA-GC-CGCGa -5'
21235 3' -53.2 NC_004778.3 + 122780 0.9 0.084448
Target:  5'- uCGcUUUUCGAGAaaAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUUU--UCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 114070 0.67 0.937818
Target:  5'- uCGcUCUCcgcGAGCGAGGaacccgCGGCGCc -3'
miRNA:   3'- -GCaAGAGcuuUUCGCUCCa-----GCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 124985 0.82 0.239368
Target:  5'- uCGuUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUU--------------UUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19907 0.91 0.069718
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122567 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 5138 0.68 0.910066
Target:  5'- cCGUUCUCGAAAcaacGCGccguGGcaaugucgCGGCGCa -3'
miRNA:   3'- -GCAAGAGCUUUu---CGCu---CCa-------GCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 125222 0.69 0.876152
Target:  5'- uCGUaCUUGAAAAuCGGGGUCaGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUcGCUCCAGcCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.