miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 3' -47.5 NC_004778.3 + 19686 0.66 0.999677
Target:  5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 122238 0.66 0.999677
Target:  5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGa- -3'
miRNA:   3'- -AGGuuUCUaUCGUG-----AGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 49455 0.66 0.999677
Target:  5'- gUCCAAuGAccGCGCcgCGCUgUUCGGc -3'
miRNA:   3'- -AGGUUuCUauCGUGa-GCGAaAAGCCc -5'
21236 3' -47.5 NC_004778.3 + 122670 0.66 0.999677
Target:  5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 20040 0.66 0.999677
Target:  5'- aCguAAGAUAGCACU-GCgaggUCGGc -3'
miRNA:   3'- aGguUUCUAUCGUGAgCGaaa-AGCCc -5'
21236 3' -47.5 NC_004778.3 + 122411 0.66 0.999677
Target:  5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 35989 0.66 0.999591
Target:  5'- gCCGucaacucguuGGGAUGGCAC-CGCacggCGGGc -3'
miRNA:   3'- aGGU----------UUCUAUCGUGaGCGaaaaGCCC- -5'
21236 3' -47.5 NC_004778.3 + 124996 0.66 0.999203
Target:  5'- gUCUGA----GGCAUUCGUUUUUCGGa -3'
miRNA:   3'- -AGGUUucuaUCGUGAGCGAAAAGCCc -5'
21236 3' -47.5 NC_004778.3 + 28699 0.67 0.999018
Target:  5'- gCCAAcaAUAGCGCUCGCUgcagCGc- -3'
miRNA:   3'- aGGUUucUAUCGUGAGCGAaaa-GCcc -5'
21236 3' -47.5 NC_004778.3 + 122489 0.67 0.998797
Target:  5'- aCgAuuGAaaAGCGCcgaccUCGCUUUUCGGGa -3'
miRNA:   3'- aGgUuuCUa-UCGUG-----AGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 122545 0.68 0.996953
Target:  5'- gCUAuAGAcguGCGucagcgccgacCUCGCUUUUCGGGu -3'
miRNA:   3'- aGGUuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 99447 0.68 0.995742
Target:  5'- gUCUAAAaAUAGCACaUGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUcUAUCGUGaGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 99527 0.69 0.992144
Target:  5'- aUCUuuAGAcguGCGucggcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 19736 0.69 0.992144
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 66544 0.69 0.992144
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 122297 0.7 0.989606
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 95211 0.7 0.988118
Target:  5'- gCCGGAaguagcgccGAUAGUACUCGUUgaggcCGGGg -3'
miRNA:   3'- aGGUUU---------CUAUCGUGAGCGAaaa--GCCC- -5'
21236 3' -47.5 NC_004778.3 + 20022 0.71 0.980462
Target:  5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGGGa -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 122793 0.71 0.975476
Target:  5'- -aCGuuuAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- agGUuucUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 122681 0.72 0.955038
Target:  5'- gUCU----AUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.