Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21236 | 3' | -47.5 | NC_004778.3 | + | 19686 | 0.66 | 0.999677 |
Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122238 | 0.66 | 0.999677 |
Target: 5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuUCUaUCGUG-----AGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 49455 | 0.66 | 0.999677 |
Target: 5'- gUCCAAuGAccGCGCcgCGCUgUUCGGc -3' miRNA: 3'- -AGGUUuCUauCGUGa-GCGAaAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122670 | 0.66 | 0.999677 |
Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20040 | 0.66 | 0.999677 |
Target: 5'- aCguAAGAUAGCACU-GCgaggUCGGc -3' miRNA: 3'- aGguUUCUAUCGUGAgCGaaa-AGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122411 | 0.66 | 0.999677 |
Target: 5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 35989 | 0.66 | 0.999591 |
Target: 5'- gCCGucaacucguuGGGAUGGCAC-CGCacggCGGGc -3' miRNA: 3'- aGGU----------UUCUAUCGUGaGCGaaaaGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 124996 | 0.66 | 0.999203 |
Target: 5'- gUCUGA----GGCAUUCGUUUUUCGGa -3' miRNA: 3'- -AGGUUucuaUCGUGAGCGAAAAGCCc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 28699 | 0.67 | 0.999018 |
Target: 5'- gCCAAcaAUAGCGCUCGCUgcagCGc- -3' miRNA: 3'- aGGUUucUAUCGUGAGCGAaaa-GCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122489 | 0.67 | 0.998797 |
Target: 5'- aCgAuuGAaaAGCGCcgaccUCGCUUUUCGGGa -3' miRNA: 3'- aGgUuuCUa-UCGUG-----AGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122545 | 0.68 | 0.996953 |
Target: 5'- gCUAuAGAcguGCGucagcgccgacCUCGCUUUUCGGGu -3' miRNA: 3'- aGGUuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99447 | 0.68 | 0.995742 |
Target: 5'- gUCUAAAaAUAGCACaUGCUUUUCGa- -3' miRNA: 3'- -AGGUUUcUAUCGUGaGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 99527 | 0.69 | 0.992144 |
Target: 5'- aUCUuuAGAcguGCGucggcgccgacCUCGCUUUUCGGGc -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 19736 | 0.69 | 0.992144 |
Target: 5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 66544 | 0.69 | 0.992144 |
Target: 5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122297 | 0.7 | 0.989606 |
Target: 5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGu -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 95211 | 0.7 | 0.988118 |
Target: 5'- gCCGGAaguagcgccGAUAGUACUCGUUgaggcCGGGg -3' miRNA: 3'- aGGUUU---------CUAUCGUGAGCGAaaa--GCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 20022 | 0.71 | 0.980462 |
Target: 5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGGGa -3' miRNA: 3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122793 | 0.71 | 0.975476 |
Target: 5'- -aCGuuuAUAGCACUCGCUUUUCGa- -3' miRNA: 3'- agGUuucUAUCGUGAGCGAAAAGCcc -5' |
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21236 | 3' | -47.5 | NC_004778.3 | + | 122681 | 0.72 | 0.955038 |
Target: 5'- gUCU----AUAGCACUCGCUUUUCGa- -3' miRNA: 3'- -AGGuuucUAUCGUGAGCGAAAAGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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