miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21258 3' -55.2 NC_004778.3 + 49581 0.66 0.918704
Target:  5'- uUGCcuAGCGACUgGcACCGacagGUagCCGUGCg -3'
miRNA:   3'- -ACG--UCGCUGAgC-UGGU----UAagGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 33441 0.66 0.918704
Target:  5'- aUGCGGCGGCgcgaaaagcgCGGCCG---UCCGCa- -3'
miRNA:   3'- -ACGUCGCUGa---------GCUGGUuaaGGGCGcg -5'
21258 3' -55.2 NC_004778.3 + 68648 0.66 0.918704
Target:  5'- cGUAGCGACccaaaGugC-GUUCCaaCGCGCg -3'
miRNA:   3'- aCGUCGCUGag---CugGuUAAGG--GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 112184 0.66 0.918704
Target:  5'- gUGCGGCccGACccCGACCcgcuguUUCCCGaGCg -3'
miRNA:   3'- -ACGUCG--CUGa-GCUGGuu----AAGGGCgCG- -5'
21258 3' -55.2 NC_004778.3 + 95265 0.66 0.918704
Target:  5'- cGCGGCGAC-CGcACCGucgCUaaCGCGUg -3'
miRNA:   3'- aCGUCGCUGaGC-UGGUuaaGG--GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 33001 0.66 0.918704
Target:  5'- uUGCcGCGAUgUCGGCCAcgUaggccagCCGCGUc -3'
miRNA:   3'- -ACGuCGCUG-AGCUGGUuaAg------GGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 76301 0.66 0.918704
Target:  5'- aGCAGCGACgcucuugaGugCGAagaCCCGUGg -3'
miRNA:   3'- aCGUCGCUGag------CugGUUaa-GGGCGCg -5'
21258 3' -55.2 NC_004778.3 + 93230 0.66 0.912828
Target:  5'- uUGCAGCG---CGACCAAcgCCUuggcagaaGCGCa -3'
miRNA:   3'- -ACGUCGCugaGCUGGUUaaGGG--------CGCG- -5'
21258 3' -55.2 NC_004778.3 + 77712 0.66 0.912828
Target:  5'- gUGCGGau-CUaCGACCucagcacaCCCGCGCg -3'
miRNA:   3'- -ACGUCgcuGA-GCUGGuuaa----GGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 57227 0.66 0.912828
Target:  5'- aGCuGUgGACUCGACCGG---CCGCGa -3'
miRNA:   3'- aCGuCG-CUGAGCUGGUUaagGGCGCg -5'
21258 3' -55.2 NC_004778.3 + 34636 0.66 0.906707
Target:  5'- gGCGGCGuuaaacugguuCUCGACCGcgGUgcgcUCCucgaCGCGCa -3'
miRNA:   3'- aCGUCGCu----------GAGCUGGU--UA----AGG----GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 119342 0.66 0.906707
Target:  5'- cUGCGuGUGGCUUGGCguGgacgggCCCGUGUa -3'
miRNA:   3'- -ACGU-CGCUGAGCUGguUaa----GGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 60720 0.66 0.906707
Target:  5'- -aCAGCGACUaCGugCAuga-CCGCGg -3'
miRNA:   3'- acGUCGCUGA-GCugGUuaagGGCGCg -5'
21258 3' -55.2 NC_004778.3 + 119380 0.66 0.906082
Target:  5'- cGCAGUuuACUgcgucggaguaugUGACCGGUUUUCGCGCc -3'
miRNA:   3'- aCGUCGc-UGA-------------GCUGGUUAAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 27770 0.66 0.906082
Target:  5'- gGCgAGCGACaacuucaUCaACCug--CCCGCGCu -3'
miRNA:   3'- aCG-UCGCUG-------AGcUGGuuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 4695 0.66 0.906082
Target:  5'- cGgAGUGaACUCGuGCCAgcgaucggggaacAUUCCgCGCGCc -3'
miRNA:   3'- aCgUCGC-UGAGC-UGGU-------------UAAGG-GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 107860 0.66 0.900346
Target:  5'- uUGUuugAGCGGCUgGGCCA--UCuuGcCGCa -3'
miRNA:   3'- -ACG---UCGCUGAgCUGGUuaAGggC-GCG- -5'
21258 3' -55.2 NC_004778.3 + 95934 0.66 0.900346
Target:  5'- cGCAGCG---CGGCCGGcgcgcUgCCGCGCg -3'
miRNA:   3'- aCGUCGCugaGCUGGUUa----AgGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 121418 0.66 0.899697
Target:  5'- aGCAGCaGGCacgcgUCGGCCGugUCgccgccgucggcgCCGCGCa -3'
miRNA:   3'- aCGUCG-CUG-----AGCUGGUuaAG-------------GGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 15446 0.66 0.899697
Target:  5'- cGCAGCGccgccuccGCgCGACCAcgccaaaGUgcUgCCGCGCa -3'
miRNA:   3'- aCGUCGC--------UGaGCUGGU-------UA--AgGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.