miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 125062 0.83 0.481548
Target:  5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 125000 0.81 0.609467
Target:  5'- gCAUGUCUGaGGCAUUCGUUUUUCGGa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 124940 0.83 0.481548
Target:  5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 123132 0.68 0.996476
Target:  5'- uGCGUC---GGCGCcaacccCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122942 0.67 0.998038
Target:  5'- aCACGUCcguacacguaaacgUAUGGCACUCGUacccgaaaagCGGGg -3'
miRNA:   3'- -GUGCAG--------------AUAUCGUGAGCGaaaa------GCUC- -5'
21269 3' -47.5 NC_004778.3 + 122862 0.83 0.502105
Target:  5'- aCGCaGUCUAaagaUAGCACUUGUUUUUCGAGa -3'
miRNA:   3'- -GUG-CAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122856 0.7 0.988289
Target:  5'- gCAUGUCUAaGGgAUUUGUUUUUUGAGa -3'
miRNA:   3'- -GUGCAGAUaUCgUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122795 1.05 0.029801
Target:  5'- gCACGUUUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122747 1.1 0.013814
Target:  5'- gCACGUCUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122741 0.67 0.997926
Target:  5'- -cUGUCUGaGGCAUU-GUUUUUCGAGa -3'
miRNA:   3'- guGCAGAUaUCGUGAgCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122685 1.1 0.013814
Target:  5'- gCACGUCUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122665 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122555 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122439 0.78 0.729143
Target:  5'- gCACGUCUAaagaUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 122406 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122308 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99943 0.94 0.137084
Target:  5'- gCAUGUCUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99877 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99811 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99746 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.