miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 24094 0.66 0.999609
Target:  5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 124940 0.83 0.481548
Target:  5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 67011 0.86 0.351004
Target:  5'- gACGcCUAaagaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCaGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122747 1.1 0.013814
Target:  5'- gCACGUCUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 123132 0.68 0.996476
Target:  5'- uGCGUC---GGCGCcaacccCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 42798 0.68 0.996476
Target:  5'- aGCGUCUu--GCACUCGUgcaccgUCGGc -3'
miRNA:   3'- gUGCAGAuauCGUGAGCGaaa---AGCUc -5'
21269 3' -47.5 NC_004778.3 + 99516 0.72 0.959293
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24028 0.72 0.95527
Target:  5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 31580 0.77 0.780555
Target:  5'- uGCGUCUAUaaAGCGCUCGCUaugUUUCa-- -3'
miRNA:   3'- gUGCAGAUA--UCGUGAGCGA---AAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 122862 0.83 0.502105
Target:  5'- aCGCaGUCUAaagaUAGCACUUGUUUUUCGAGa -3'
miRNA:   3'- -GUG-CAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66946 0.8 0.664377
Target:  5'- gCACGUaagAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- -GUGCAga-UAUCGUGAGCGAAAAGCuc -5'
21269 3' -47.5 NC_004778.3 + 68245 0.72 0.95527
Target:  5'- uGCGUCgcUGGCGCUCggGCUgUUCGAa -3'
miRNA:   3'- gUGCAGauAUCGUGAG--CGAaAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 24292 0.66 0.999609
Target:  5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19942 0.8 0.653414
Target:  5'- gCACGUUaaagAUAGCACUUGUUUUUCGAu -3'
miRNA:   3'- -GUGCAGa---UAUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 99640 0.66 0.999233
Target:  5'- uGCGUC---AGCGCcgacccUGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24226 0.72 0.95527
Target:  5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 125000 0.81 0.609467
Target:  5'- gCAUGUCUGaGGCAUUCGUUUUUCGGa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 125062 0.83 0.481548
Target:  5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 80822 0.67 0.998582
Target:  5'- aCGCGUgcCUuaaagaGUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- -GUGCA--GA------UAUCGUGaGCGAaAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 5738 0.7 0.986651
Target:  5'- gACGg--GUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- gUGCagaUAUCGUGAGCGaAAAGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.