miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 43961 0.66 0.930056
Target:  5'- --gUAGCGCUGAuCCUUGUg---CGGGu -3'
miRNA:   3'- gcaGUCGCGGCU-GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 8321 0.66 0.928492
Target:  5'- uG-CAGCuCUGACCUCGUUUUUauuguugcucugaaUGGGg -3'
miRNA:   3'- gCaGUCGcGGCUGGAGCGAAAA--------------GCCC- -5'
21283 3' -55.4 NC_004778.3 + 83226 0.66 0.924758
Target:  5'- -uUCAGCGgCGGCCa-GCUgcaCGGGc -3'
miRNA:   3'- gcAGUCGCgGCUGGagCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 21089 0.66 0.919222
Target:  5'- gCGUCAGCGCgGugCagccCGCggagCGGa -3'
miRNA:   3'- -GCAGUCGCGgCugGa---GCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 64778 0.66 0.919222
Target:  5'- --aCGGCGCCGaugGCCaauaUGCUUgUUCGGGc -3'
miRNA:   3'- gcaGUCGCGGC---UGGa---GCGAA-AAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66633 0.66 0.915786
Target:  5'- -aUCGGCGCCGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gcAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 100664 0.66 0.913447
Target:  5'- uGUCGGCGUCGcgcuCCcCGUUgccaagagUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCu---GGaGCGAaa------AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 49468 0.66 0.911669
Target:  5'- uGUgCGGCGCCGcguccaaugaccgcGCCgCGCUgUUCGGc -3'
miRNA:   3'- gCA-GUCGCGGC--------------UGGaGCGAaAAGCCc -5'
21283 3' -55.4 NC_004778.3 + 99864 0.66 0.909869
Target:  5'- gGUCGaCGCUGACgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUcGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 90813 0.66 0.907435
Target:  5'- aCG-CAGCGUCGACCgCGCUgacguugaCGGc -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAaaa-----GCCc -5'
21283 3' -55.4 NC_004778.3 + 99930 0.66 0.901188
Target:  5'- gGUCgacgcuGGCGCaUGucuaaaaauaGCaCUCGCUUUUCGGGu -3'
miRNA:   3'- gCAG------UCGCG-GC----------UG-GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99733 0.66 0.901188
Target:  5'- gGUCgacgcuGGCGCaUGuuuaaaaauaGCaCUCGCUUUUCGGGu -3'
miRNA:   3'- gCAG------UCGCG-GC----------UG-GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 123050 0.66 0.901188
Target:  5'- uGUUgguGGCGCCGACCcCGCUUUcCa-- -3'
miRNA:   3'- gCAG---UCGCGGCUGGaGCGAAAaGccc -5'
21283 3' -55.4 NC_004778.3 + 114531 0.67 0.881062
Target:  5'- cCGUUgcuacgcaAGgGCCGGCCUCGCccg-CGGc -3'
miRNA:   3'- -GCAG--------UCgCGGCUGGAGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 112653 0.67 0.881062
Target:  5'- ----uGCGUC-ACCUUGUUUUUCGGGu -3'
miRNA:   3'- gcaguCGCGGcUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 54242 0.67 0.881062
Target:  5'- uGUCGGCGCUuuggGACCgcgUCGCUUgcgUCGc- -3'
miRNA:   3'- gCAGUCGCGG----CUGG---AGCGAAa--AGCcc -5'
21283 3' -55.4 NC_004778.3 + 89338 0.67 0.873906
Target:  5'- cCGUgGGCcgauuGCCGACgUCGCUUUgUGGu -3'
miRNA:   3'- -GCAgUCG-----CGGCUGgAGCGAAAaGCCc -5'
21283 3' -55.4 NC_004778.3 + 12732 0.67 0.873906
Target:  5'- uGUCGuaaugugccGCGCCGAUUcCGCUg-UCGGGc -3'
miRNA:   3'- gCAGU---------CGCGGCUGGaGCGAaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 95155 0.67 0.873906
Target:  5'- cCGUCGGCGCaCGGCg-CGCg---CGGa -3'
miRNA:   3'- -GCAGUCGCG-GCUGgaGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 95210 0.67 0.873906
Target:  5'- cCGgaagUAGCGCCGAUaguaCUCGUUgaggcCGGGg -3'
miRNA:   3'- -GCa---GUCGCGGCUG----GAGCGAaaa--GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.