miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21333 3' -54.5 NC_004778.3 + 58165 0.66 0.920348
Target:  5'- gUGCACgcaGUgGCAUGCGCucguugcGCAGCguCa -3'
miRNA:   3'- aGCGUG---UAgCGUACGCGu------UGUCGguG- -5'
21333 3' -54.5 NC_004778.3 + 43203 0.66 0.920348
Target:  5'- gUUGUACA-CGguCAUGUGCAGCaAGCCGg -3'
miRNA:   3'- -AGCGUGUaGC--GUACGCGUUG-UCGGUg -5'
21333 3' -54.5 NC_004778.3 + 36853 0.66 0.920348
Target:  5'- gUGCGCGUCuugGCGaGCGCGguguugcccACGGCCGg -3'
miRNA:   3'- aGCGUGUAG---CGUaCGCGU---------UGUCGGUg -5'
21333 3' -54.5 NC_004778.3 + 38355 0.66 0.920348
Target:  5'- gUCGCGCG-CGCuagcGCGCAuu-GCCAg -3'
miRNA:   3'- -AGCGUGUaGCGua--CGCGUuguCGGUg -5'
21333 3' -54.5 NC_004778.3 + 10403 0.66 0.919766
Target:  5'- gCGCGCAaucggCGCGcUGCGCAcuaaACAccugcucGCCGCc -3'
miRNA:   3'- aGCGUGUa----GCGU-ACGCGU----UGU-------CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 80155 0.66 0.914417
Target:  5'- gUGCACuuUUGCGUGCGUcAUAGCacgaaGCg -3'
miRNA:   3'- aGCGUGu-AGCGUACGCGuUGUCGg----UG- -5'
21333 3' -54.5 NC_004778.3 + 128036 0.66 0.914417
Target:  5'- cCGCACA-CGCAgccCGUAacacaACAGUCGCa -3'
miRNA:   3'- aGCGUGUaGCGUac-GCGU-----UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 78377 0.66 0.914417
Target:  5'- gUGUcCAUUGUGUaGCGCAGuuGCCACa -3'
miRNA:   3'- aGCGuGUAGCGUA-CGCGUUguCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 32951 0.66 0.914417
Target:  5'- aCGaCACcgcCGCGUG-GCuguGCGGCCGCg -3'
miRNA:   3'- aGC-GUGua-GCGUACgCGu--UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 100493 0.66 0.914417
Target:  5'- cCGCGCAaaauuaUUGUggGCGUugccauguACGGCCGCg -3'
miRNA:   3'- aGCGUGU------AGCGuaCGCGu-------UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 111764 0.66 0.914417
Target:  5'- aCGCcCAUUGCGUacucggcgcGCGUAACA-CCGCg -3'
miRNA:   3'- aGCGuGUAGCGUA---------CGCGUUGUcGGUG- -5'
21333 3' -54.5 NC_004778.3 + 75754 0.66 0.91381
Target:  5'- gUCGCGCuccucggCGCuggcggcaagcauGUGCGCAaacACGGCCuCg -3'
miRNA:   3'- -AGCGUGua-----GCG-------------UACGCGU---UGUCGGuG- -5'
21333 3' -54.5 NC_004778.3 + 98901 0.66 0.910736
Target:  5'- cUUGCACG-CGCGcUGCuacaacacgaagcacGCuGCGGCCGCg -3'
miRNA:   3'- -AGCGUGUaGCGU-ACG---------------CGuUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 34510 0.66 0.908861
Target:  5'- cUCGCGCuacCGCGUGCuGCuuauguccaucaaguGCGGCgGCg -3'
miRNA:   3'- -AGCGUGua-GCGUACG-CGu--------------UGUCGgUG- -5'
21333 3' -54.5 NC_004778.3 + 23524 0.66 0.908231
Target:  5'- gCGUAUcgaAUCGCcgGCGCGcaaguAUAuGCCGCa -3'
miRNA:   3'- aGCGUG---UAGCGuaCGCGU-----UGU-CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 2569 0.66 0.908231
Target:  5'- aCGCGCAauaaaguggUCGUcggGCGCGGgcacguCGGCCACc -3'
miRNA:   3'- aGCGUGU---------AGCGua-CGCGUU------GUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 121574 0.66 0.908231
Target:  5'- gCGaCACGgccgaCGCGUGCcuGCugcuCAGCCGCa -3'
miRNA:   3'- aGC-GUGUa----GCGUACG--CGuu--GUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 81879 0.66 0.908231
Target:  5'- cCGgAUAUCGCAgGCGCcgcuacuaAGCGGUCAUc -3'
miRNA:   3'- aGCgUGUAGCGUaCGCG--------UUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 106617 0.66 0.901794
Target:  5'- gUUGCGCGUuuUGCGcGCGCAGCGcGCUcaGCg -3'
miRNA:   3'- -AGCGUGUA--GCGUaCGCGUUGU-CGG--UG- -5'
21333 3' -54.5 NC_004778.3 + 52609 0.66 0.901794
Target:  5'- gUCGCGCGauauggcaaaaUCGCGcgGCG-AAUAGUCGCg -3'
miRNA:   3'- -AGCGUGU-----------AGCGUa-CGCgUUGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.