miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 127071 0.69 0.630397
Target:  5'- gUGCcGUCGUgCA-CGCCCGgcgagUGCUCGCg -3'
miRNA:   3'- gACGuUAGCA-GUcGCGGGC-----ACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 124230 0.7 0.549678
Target:  5'- -cGCGcgCaUCAGCGCgCCGUGCauCUGCa -3'
miRNA:   3'- gaCGUuaGcAGUCGCG-GGCACG--GGCG- -5'
21340 5' -58.4 NC_004778.3 + 124040 0.66 0.78759
Target:  5'- gCUGCAGuuucuuguacuUCGUgcaAGUGCUCGUGCagaUGCa -3'
miRNA:   3'- -GACGUU-----------AGCAg--UCGCGGGCACGg--GCG- -5'
21340 5' -58.4 NC_004778.3 + 121718 0.68 0.64057
Target:  5'- -gGCAcGUUGUCGGCGCgCCGUaGCUgGUu -3'
miRNA:   3'- gaCGU-UAGCAGUCGCG-GGCA-CGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 121312 0.66 0.750179
Target:  5'- gCUGCAGaUGgcuugCAGCuGCgCCGUGUCgGCg -3'
miRNA:   3'- -GACGUUaGCa----GUCG-CG-GGCACGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 120134 0.72 0.453955
Target:  5'- -aGCAAUCGUagggguuGCGCUC-UGCCUGCg -3'
miRNA:   3'- gaCGUUAGCAgu-----CGCGGGcACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 118586 0.69 0.620226
Target:  5'- uUGCGAUaca-GGCGCgCCGUGCaacCCGCa -3'
miRNA:   3'- gACGUUAgcagUCGCG-GGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 117970 0.69 0.630397
Target:  5'- -cGUuGUCGUCGuCGCUgGUGCgCCGCu -3'
miRNA:   3'- gaCGuUAGCAGUcGCGGgCACG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 114751 0.67 0.691169
Target:  5'- aUGCGuacAagGUCGGgGCCCGUgugcaaaacgGCUCGCa -3'
miRNA:   3'- gACGU---UagCAGUCgCGGGCA----------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 112225 0.66 0.759708
Target:  5'- -aGCAcaccAUCaUgGGCGUagacgaCGUGCCCGCg -3'
miRNA:   3'- gaCGU----UAGcAgUCGCGg-----GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 112190 0.67 0.736668
Target:  5'- aCUGCAcuUCGuucUCGGCGCCCucgcgcauagcgGCCgCGCg -3'
miRNA:   3'- -GACGUu-AGC---AGUCGCGGGca----------CGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 111709 0.67 0.740548
Target:  5'- uUGCAG-CGUCGGCGCCUccGaaaaCUGCu -3'
miRNA:   3'- gACGUUaGCAGUCGCGGGcaCg---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 111274 0.69 0.630397
Target:  5'- -aGCAAUgcgCGUUAGCGCCU-UGgCCGCc -3'
miRNA:   3'- gaCGUUA---GCAGUCGCGGGcACgGGCG- -5'
21340 5' -58.4 NC_004778.3 + 110003 0.67 0.711128
Target:  5'- -aGUggUgGUCAGCGucCCCGaauaUGCgCCGCu -3'
miRNA:   3'- gaCGuuAgCAGUCGC--GGGC----ACG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 108613 0.67 0.730823
Target:  5'- -cGCAG-CG-CAGCuGUCCGUacaacaaauacaGCCCGCg -3'
miRNA:   3'- gaCGUUaGCaGUCG-CGGGCA------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 107656 0.71 0.500811
Target:  5'- -aGUGAUCGUUccgaCGCCCGUGUCgCGCg -3'
miRNA:   3'- gaCGUUAGCAGuc--GCGGGCACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 106285 1.11 0.001105
Target:  5'- aCUGCAAUCGUCAGCGCCCGUGCCCGCc -3'
miRNA:   3'- -GACGUUAGCAGUCGCGGGCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 106054 0.66 0.778423
Target:  5'- -aGaCAAgUGUCGGCGCCgCGUguuuuaauaacaGCCCGUc -3'
miRNA:   3'- gaC-GUUaGCAGUCGCGG-GCA------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 98743 0.66 0.750179
Target:  5'- gUGCuucguGUUGUagCAGCGCgCGUGCaagCCGCc -3'
miRNA:   3'- gACGu----UAGCA--GUCGCGgGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 95407 0.74 0.329428
Target:  5'- gUGCGGUCGccgCGGCGCaCCaUGCCCGa -3'
miRNA:   3'- gACGUUAGCa--GUCGCG-GGcACGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.