miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 129538 0.69 0.972424
Target:  5'- cGgGCGCGUcGAccGCGCGCAAauacgcAUUGGc -3'
miRNA:   3'- -CgCGCGCGuUU--UGCGCGUUga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 128953 0.68 0.99068
Target:  5'- uGUGCGCGUcaccUGCGUuuUUAUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 127422 0.67 0.994711
Target:  5'- uUGUGCGCGGAAauuguuuUGCGCAgguagagcuuGCUggUGGg -3'
miRNA:   3'- cGCGCGCGUUUU-------GCGCGU----------UGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 127005 0.72 0.919978
Target:  5'- aCGUGCGCAAcuugcaGGCGCGCGAUUuugUGu -3'
miRNA:   3'- cGCGCGCGUU------UUGCGCGUUGAua-ACc -5'
21341 5' -49.2 NC_004778.3 + 124723 0.72 0.924635
Target:  5'- uGCGCGCGCGccuacgugacucGGCGCGC-GCUGUUu- -3'
miRNA:   3'- -CGCGCGCGUu-----------UUGCGCGuUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 124564 0.78 0.626573
Target:  5'- aGCGCGCGCcGAgucacguaggcgcGCGCGCAACUuuuUUGc -3'
miRNA:   3'- -CGCGCGCGuUU-------------UGCGCGUUGAu--AACc -5'
21341 5' -49.2 NC_004778.3 + 124444 0.67 0.995547
Target:  5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3'
miRNA:   3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 124284 0.66 0.996789
Target:  5'- gGCGCGCuuCAAGAaugcugaaGCGCGGCgccggcgUGGg -3'
miRNA:   3'- -CGCGCGc-GUUUUg-------CGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 124231 0.69 0.977802
Target:  5'- cCGCGCGCAucAGCGCGCcguGCa----- -3'
miRNA:   3'- cGCGCGCGUu-UUGCGCGu--UGauaacc -5'
21341 5' -49.2 NC_004778.3 + 124084 0.72 0.913918
Target:  5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3'
miRNA:   3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 122043 0.7 0.962685
Target:  5'- -aGCGCcCAGcACGCGUAACU--UGGg -3'
miRNA:   3'- cgCGCGcGUUuUGCGCGUUGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 121970 0.69 0.980181
Target:  5'- aGCGCGggcgacaucaacCGCAuuACGCGCGGCa----- -3'
miRNA:   3'- -CGCGC------------GCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 121688 0.67 0.992973
Target:  5'- cGCGUGCGCuucACGUGCAggcccGCgucgGGc -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-----UGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 119261 0.66 0.996789
Target:  5'- cGCGCGuCGCGGucAACuuGCAACUGa--- -3'
miRNA:   3'- -CGCGC-GCGUU--UUGcgCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 119121 0.68 0.987677
Target:  5'- cGgGCGCGgGAAcgGCGCcCAauaagacGCUGUUGGu -3'
miRNA:   3'- -CgCGCGCgUUU--UGCGcGU-------UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 118934 0.66 0.997648
Target:  5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3'
miRNA:   3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5'
21341 5' -49.2 NC_004778.3 + 118866 0.69 0.977802
Target:  5'- gGCGCGCGCA-----CGCAACUGa-GGa -3'
miRNA:   3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 118782 0.69 0.977802
Target:  5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 116788 0.71 0.931301
Target:  5'- uGgGCGCGUAAAACGCGUucAGCgugccGGu -3'
miRNA:   3'- -CgCGCGCGUUUUGCGCG--UUGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 114803 0.66 0.996789
Target:  5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3'
miRNA:   3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.