Results 1 - 20 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 129538 | 0.69 | 0.972424 |
Target: 5'- cGgGCGCGUcGAccGCGCGCAAauacgcAUUGGc -3' miRNA: 3'- -CgCGCGCGuUU--UGCGCGUUga----UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 128953 | 0.68 | 0.99068 |
Target: 5'- uGUGCGCGUcaccUGCGUuuUUAUUGGg -3' miRNA: 3'- -CGCGCGCGuuuuGCGCGuuGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 127422 | 0.67 | 0.994711 |
Target: 5'- uUGUGCGCGGAAauuguuuUGCGCAgguagagcuuGCUggUGGg -3' miRNA: 3'- cGCGCGCGUUUU-------GCGCGU----------UGAuaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 127005 | 0.72 | 0.919978 |
Target: 5'- aCGUGCGCAAcuugcaGGCGCGCGAUUuugUGu -3' miRNA: 3'- cGCGCGCGUU------UUGCGCGUUGAua-ACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124723 | 0.72 | 0.924635 |
Target: 5'- uGCGCGCGCGccuacgugacucGGCGCGC-GCUGUUu- -3' miRNA: 3'- -CGCGCGCGUu-----------UUGCGCGuUGAUAAcc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124564 | 0.78 | 0.626573 |
Target: 5'- aGCGCGCGCcGAgucacguaggcgcGCGCGCAACUuuuUUGc -3' miRNA: 3'- -CGCGCGCGuUU-------------UGCGCGUUGAu--AACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124444 | 0.67 | 0.995547 |
Target: 5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3' miRNA: 3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124284 | 0.66 | 0.996789 |
Target: 5'- gGCGCGCuuCAAGAaugcugaaGCGCGGCgccggcgUGGg -3' miRNA: 3'- -CGCGCGc-GUUUUg-------CGCGUUGaua----ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124231 | 0.69 | 0.977802 |
Target: 5'- cCGCGCGCAucAGCGCGCcguGCa----- -3' miRNA: 3'- cGCGCGCGUu-UUGCGCGu--UGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124084 | 0.72 | 0.913918 |
Target: 5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3' miRNA: 3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 122043 | 0.7 | 0.962685 |
Target: 5'- -aGCGCcCAGcACGCGUAACU--UGGg -3' miRNA: 3'- cgCGCGcGUUuUGCGCGUUGAuaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 121970 | 0.69 | 0.980181 |
Target: 5'- aGCGCGggcgacaucaacCGCAuuACGCGCGGCa----- -3' miRNA: 3'- -CGCGC------------GCGUuuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 121688 | 0.67 | 0.992973 |
Target: 5'- cGCGUGCGCuucACGUGCAggcccGCgucgGGc -3' miRNA: 3'- -CGCGCGCGuuuUGCGCGU-----UGauaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 119261 | 0.66 | 0.996789 |
Target: 5'- cGCGCGuCGCGGucAACuuGCAACUGa--- -3' miRNA: 3'- -CGCGC-GCGUU--UUGcgCGUUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 119121 | 0.68 | 0.987677 |
Target: 5'- cGgGCGCGgGAAcgGCGCcCAauaagacGCUGUUGGu -3' miRNA: 3'- -CgCGCGCgUUU--UGCGcGU-------UGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118934 | 0.66 | 0.997648 |
Target: 5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3' miRNA: 3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118866 | 0.69 | 0.977802 |
Target: 5'- gGCGCGCGCA-----CGCAACUGa-GGa -3' miRNA: 3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118782 | 0.69 | 0.977802 |
Target: 5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3' miRNA: 3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 116788 | 0.71 | 0.931301 |
Target: 5'- uGgGCGCGUAAAACGCGUucAGCgugccGGu -3' miRNA: 3'- -CgCGCGCGUUUUGCGCG--UUGauaa-CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 114803 | 0.66 | 0.996789 |
Target: 5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3' miRNA: 3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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