miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 59998 0.66 0.8513
Target:  5'- ---cGGAGUCgGCCGCGGaCGaCcUGCCc -3'
miRNA:   3'- gcaaCCUUAGaCGGUGCC-GC-GcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 93054 0.66 0.846553
Target:  5'- --gUGGAGuccggaauuugcgcuUCUGCCAaGGCGUuggucGCGCUg -3'
miRNA:   3'- gcaACCUU---------------AGACGGUgCCGCG-----CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 105145 0.66 0.843349
Target:  5'- -aUUGGGc---GCCGCGGCGCGCu-- -3'
miRNA:   3'- gcAACCUuagaCGGUGCCGCGCGcgg -5'
21346 3' -57.3 NC_004778.3 + 36506 0.66 0.843349
Target:  5'- aCGUUGGAGUgCagcgUGCCGuuGCGCGacaugaCGCCc -3'
miRNA:   3'- -GCAACCUUA-G----ACGGUgcCGCGC------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 31905 0.66 0.843349
Target:  5'- cCGUUGGA----GCU--GGCGaCGCGCCg -3'
miRNA:   3'- -GCAACCUuagaCGGugCCGC-GCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 109995 0.66 0.835208
Target:  5'- --cUGGuGUCgguggUGaCCACGGUguuucgGCGCGCCg -3'
miRNA:   3'- gcaACCuUAG-----AC-GGUGCCG------CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 121430 0.66 0.835208
Target:  5'- gCGUcGGccguGUCgccGCCGuCGGCGCcGCGCa -3'
miRNA:   3'- -GCAaCCu---UAGa--CGGU-GCCGCG-CGCGg -5'
21346 3' -57.3 NC_004778.3 + 59755 0.66 0.835208
Target:  5'- ---cGGuuuUCgGCCAagUGGCGCGCGUa -3'
miRNA:   3'- gcaaCCuu-AGaCGGU--GCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 73431 0.66 0.834384
Target:  5'- uCGUUGGAA---GCgCugGGCGCGUugggcgaucgcacGCCc -3'
miRNA:   3'- -GCAACCUUagaCG-GugCCGCGCG-------------CGG- -5'
21346 3' -57.3 NC_004778.3 + 1663 0.66 0.826884
Target:  5'- uCGUUGGcaccuUCgGUUugGGUGCG-GCCa -3'
miRNA:   3'- -GCAACCuu---AGaCGGugCCGCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 44919 0.66 0.826884
Target:  5'- aGUUGacuauaaacGGcgCUGCUguACcGCGCGCGCCc -3'
miRNA:   3'- gCAAC---------CUuaGACGG--UGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 55273 0.66 0.826884
Target:  5'- --cUGGAAguguacgaGUCGCuGGCGCGCGCa -3'
miRNA:   3'- gcaACCUUaga-----CGGUG-CCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 85444 0.66 0.819242
Target:  5'- aCGcgGGcGUUUGCgGCGGCGacggcauggacgcggGCGCCg -3'
miRNA:   3'- -GCaaCCuUAGACGgUGCCGCg--------------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 28060 0.66 0.817525
Target:  5'- --cUGGAacaugcuAUCUGCCACGcaGCagGUGUGCCc -3'
miRNA:   3'- gcaACCU-------UAGACGGUGC--CG--CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 18549 0.67 0.809716
Target:  5'- aCGUUGGG---UGCCACGGaGUucCGCCg -3'
miRNA:   3'- -GCAACCUuagACGGUGCCgCGc-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 108891 0.67 0.809716
Target:  5'- aCGUaGGAAgguggUGCCGCGaCGCaGCGCUg -3'
miRNA:   3'- -GCAaCCUUag---ACGGUGCcGCG-CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 28811 0.67 0.800889
Target:  5'- ---aGGAAaC-GCCGCGGC-CGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCGGUGCCGcGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 61627 0.67 0.800889
Target:  5'- gCGuUUGGc----GCCGCGcagccaGCGCGCGCCa -3'
miRNA:   3'- -GC-AACCuuagaCGGUGC------CGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 93166 0.67 0.800889
Target:  5'- gCGUUGGGG-CUGCUGCGcguucaCGCG-GCCg -3'
miRNA:   3'- -GCAACCUUaGACGGUGCc-----GCGCgCGG- -5'
21346 3' -57.3 NC_004778.3 + 3996 0.67 0.791909
Target:  5'- gCGUUGGGAaggGCCACGcacGUcgGCGCGUCc -3'
miRNA:   3'- -GCAACCUUagaCGGUGC---CG--CGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.