miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 125356 0.67 0.819586
Target:  5'- -------uUGCGcCgGGCGCCGACCUCg -3'
miRNA:   3'- auaucugcACGCaG-UCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 124925 0.84 0.103365
Target:  5'- --cAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 124863 0.72 0.50853
Target:  5'- --cAGACaUGCGUCAuCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUcGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 124803 0.84 0.103365
Target:  5'- --cAGACaUGCGUCAGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 123079 0.67 0.834232
Target:  5'- --cGGACGUGUuuaaaaauauuuuaGUCacguguugguGGCGCCGACCcCg -3'
miRNA:   3'- auaUCUGCACG--------------CAG----------UCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 122994 0.7 0.662909
Target:  5'- -uUAGACaUGCGUCAaCGCCGAUCcCg -3'
miRNA:   3'- auAUCUGcACGCAGUcGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 122937 0.81 0.17064
Target:  5'- --cAGACaUGCGUCAGCGCCGACUcCa -3'
miRNA:   3'- auaUCUGcACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 122724 0.68 0.764096
Target:  5'- -uUAGAC-UGCGUCGGCGCCugUCUg -3'
miRNA:   3'- auAUCUGcACGCAGUCGCGGcuGGAg -5'
21351 3' -55.9 NC_004778.3 + 122656 0.97 0.014035
Target:  5'- cUAUAaACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122608 1.08 0.002429
Target:  5'- cUAUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122546 1.08 0.002429
Target:  5'- cUAUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- -AUAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122454 1 0.008686
Target:  5'- -uUAGACGUGCGUCGGCGCCGACCUUg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122402 0.95 0.020811
Target:  5'- ----cGCGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122301 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 122139 0.91 0.039595
Target:  5'- aAUA-ACGUGCGUCAGCGCCGACCUUg -3'
miRNA:   3'- aUAUcUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 121695 0.69 0.704223
Target:  5'- cGUGGGCGUGUugcuGgccggCGGCGCUuACCUCa -3'
miRNA:   3'- aUAUCUGCACG----Ca----GUCGCGGcUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 121596 0.67 0.836761
Target:  5'- ----uAUGUGCG-CGGCGCCGACg-- -3'
miRNA:   3'- auaucUGCACGCaGUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 100081 0.73 0.460096
Target:  5'- -uUAGACaUGCGcCAGCGUCGACCc- -3'
miRNA:   3'- auAUCUGcACGCaGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 100015 0.7 0.662909
Target:  5'- -uUAaACaUGCGUCAGCGUCGACCc- -3'
miRNA:   3'- auAUcUGcACGCAGUCGCGGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 99949 0.7 0.662909
Target:  5'- -uUAaACaUGCGUCAGCGUCGACCc- -3'
miRNA:   3'- auAUcUGcACGCAGUCGCGGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.