miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 3' -59 NC_004812.1 + 127639 0.66 0.805986
Target:  5'- ----gUCCCaguccgGGGAGGCCCCGc- -3'
miRNA:   3'- ccugaAGGGgcua--CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 32133 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 30775 0.66 0.805986
Target:  5'- cGGGCgagccggCCCCGccugcgGGGccgcgggccgaGGGCCCCAc- -3'
miRNA:   3'- -CCUGaa-----GGGGCua----CCC-----------UCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 2130 0.66 0.805986
Target:  5'- ----gUCCCaguccgGGGAGGCCCCGc- -3'
miRNA:   3'- ccugaAGGGgcua--CCCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 21244 0.66 0.805986
Target:  5'- gGGACcUCCCCGu-----GGCCCCAg- -3'
miRNA:   3'- -CCUGaAGGGGCuacccuCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 19759 0.66 0.805986
Target:  5'- ------gCCCGGUGcGGGGGUCCCAg- -3'
miRNA:   3'- ccugaagGGGCUAC-CCUCCGGGGUau -5'
21373 3' -59 NC_004812.1 + 1232 0.66 0.805986
Target:  5'- gGGGCUccUCCCCGcccGGGcGGCgCCGc- -3'
miRNA:   3'- -CCUGA--AGGGGCua-CCCuCCGgGGUau -5'
21373 3' -59 NC_004812.1 + 49795 0.66 0.805117
Target:  5'- cGGGCccUCCCGcgGGGcccagucggcgcgAGGCCCCc-- -3'
miRNA:   3'- -CCUGaaGGGGCuaCCC-------------UCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 5375 0.66 0.79723
Target:  5'- cGGGCUcUCCCgCGgcGGGAGGggggucggggucUCCCAg- -3'
miRNA:   3'- -CCUGA-AGGG-GCuaCCCUCC------------GGGGUau -5'
21373 3' -59 NC_004812.1 + 36276 0.66 0.79723
Target:  5'- cGGGCUcUCCCgCGgcGGGAGGggggucggggucUCCCAg- -3'
miRNA:   3'- -CCUGA-AGGG-GCuaCCCUCC------------GGGGUau -5'
21373 3' -59 NC_004812.1 + 154740 0.66 0.788331
Target:  5'- cGGGCg--CCCGGgccaauGGAGGCCCCcgGc -3'
miRNA:   3'- -CCUGaagGGGCUac----CCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 123839 0.66 0.788331
Target:  5'- cGGGCg--CCCGGgccaauGGAGGCCCCcgGc -3'
miRNA:   3'- -CCUGaagGGGCUac----CCUCCGGGGuaU- -5'
21373 3' -59 NC_004812.1 + 28317 0.66 0.788331
Target:  5'- ----aUUCCCGGUGGGccgccuuGGCCgCCAUAa -3'
miRNA:   3'- ccugaAGGGGCUACCCu------CCGG-GGUAU- -5'
21373 3' -59 NC_004812.1 + 4492 0.66 0.779296
Target:  5'- uGGAUgaCCCCGGUGGGcGGCaugcuguucgaCCAg- -3'
miRNA:   3'- -CCUGaaGGGGCUACCCuCCGg----------GGUau -5'
21373 3' -59 NC_004812.1 + 35393 0.66 0.779296
Target:  5'- uGGAUgaCCCCGGUGGGcGGCaugcuguucgaCCAg- -3'
miRNA:   3'- -CCUGaaGGGGCUACCCuCCGg----------GGUau -5'
21373 3' -59 NC_004812.1 + 38379 0.66 0.778385
Target:  5'- cGGGCggcggggCCCGccGGGAgcucggcgacguaGGCCCCGUAg -3'
miRNA:   3'- -CCUGaag----GGGCuaCCCU-------------CCGGGGUAU- -5'
21373 3' -59 NC_004812.1 + 137948 0.66 0.770134
Target:  5'- cGGcCUUUCCCGgcGcGGcGGCCCCu-- -3'
miRNA:   3'- -CCuGAAGGGGCuaC-CCuCCGGGGuau -5'
21373 3' -59 NC_004812.1 + 137238 0.66 0.770134
Target:  5'- uGGACgUCCgCgCGGUGGGcGGGCUCaCGUGc -3'
miRNA:   3'- -CCUGaAGG-G-GCUACCC-UCCGGG-GUAU- -5'
21373 3' -59 NC_004812.1 + 137374 0.66 0.770134
Target:  5'- cGGAgUUcgagCCCCG--GGGGGGCgCCGUGg -3'
miRNA:   3'- -CCUgAA----GGGGCuaCCCUCCGgGGUAU- -5'
21373 3' -59 NC_004812.1 + 112544 0.66 0.770134
Target:  5'- cGGGCgcCCgCCGAgcgGGGGGGCgCgCCGUc -3'
miRNA:   3'- -CCUGaaGG-GGCUa--CCCUCCG-G-GGUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.