miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 1864 0.66 0.566726
Target:  5'- cGCcgGGGGCcUCCaUUgGCC-CGGGCg -3'
miRNA:   3'- uCGuaUCCCGuAGG-GGgCGGcGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 135376 0.66 0.566726
Target:  5'- aAGCcgAGGGCGcUCCUCCGguUC-CGGGUu -3'
miRNA:   3'- -UCGuaUCCCGU-AGGGGGC--GGcGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 104962 0.66 0.576379
Target:  5'- cGGCGgggagaGGGGC-UCUCggcgcgcacgCgGCCGCGGGCc -3'
miRNA:   3'- -UCGUa-----UCCCGuAGGG----------GgCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 61469 0.66 0.566726
Target:  5'- gGGCuuuGUAGGGCcccgggacgguccgCCCCCagaGCCGCcccaaagGGGCg -3'
miRNA:   3'- -UCG---UAUCCCGua------------GGGGG---CGGCG-------CCCG- -5'
21373 5' -63.1 NC_004812.1 + 20321 0.66 0.566726
Target:  5'- cGCA---GGCAccgCCCCCa-CGCGGGCg -3'
miRNA:   3'- uCGUaucCCGUa--GGGGGcgGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 137488 0.66 0.565763
Target:  5'- cGCGcGGGGCuccugGUCaaCCCCGgcgcacuacgggaUCGCGGGCa -3'
miRNA:   3'- uCGUaUCCCG-----UAG--GGGGC-------------GGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 84110 0.66 0.615297
Target:  5'- cGGCGgcGGcGCGcCCCCCGaCCcCGaGGCg -3'
miRNA:   3'- -UCGUauCC-CGUaGGGGGC-GGcGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 22688 0.66 0.575412
Target:  5'- cGCGauGGGCAggCCggcgaguagaggcCCCGCCGCgaccgaGGGCg -3'
miRNA:   3'- uCGUauCCCGUa-GG-------------GGGCGGCG------CCCG- -5'
21373 5' -63.1 NC_004812.1 + 37115 0.66 0.585099
Target:  5'- aGGCGguguuGGCG-CCCgcgucggCCGCCGCGGcGCa -3'
miRNA:   3'- -UCGUauc--CCGUaGGG-------GGCGGCGCC-CG- -5'
21373 5' -63.1 NC_004812.1 + 107306 0.66 0.575412
Target:  5'- gGGCcuUGGGGCGUUCCgggggggCgGCCGCGGucGCc -3'
miRNA:   3'- -UCGu-AUCCCGUAGGG-------GgCGGCGCC--CG- -5'
21373 5' -63.1 NC_004812.1 + 38531 0.66 0.566726
Target:  5'- gAGCAcgcGGuGGUccuUCCCCCagaagaacagguGCCGCGGGg -3'
miRNA:   3'- -UCGUa--UC-CCGu--AGGGGG------------CGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 155781 0.66 0.576379
Target:  5'- gGGCccuccGGGCGucggacaccgcuUCCCggCCgGCCGUGGGCg -3'
miRNA:   3'- -UCGuau--CCCGU------------AGGG--GG-CGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 40185 0.66 0.586069
Target:  5'- cGC--AGGcCGUCCCCagGgCGCGGGCc -3'
miRNA:   3'- uCGuaUCCcGUAGGGGg-CgGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 155601 0.66 0.576379
Target:  5'- cGCG-GGGGCGcggCCCCgGCCGgGcaGGCc -3'
miRNA:   3'- uCGUaUCCCGUa--GGGGgCGGCgC--CCG- -5'
21373 5' -63.1 NC_004812.1 + 258 0.66 0.583159
Target:  5'- cGCGggaggaggGGGGgGUCUCCCGCgCGCGcuccgccgccguccGGCc -3'
miRNA:   3'- uCGUa-------UCCCgUAGGGGGCG-GCGC--------------CCG- -5'
21373 5' -63.1 NC_004812.1 + 150582 0.66 0.575412
Target:  5'- cGGCGgcGGGC-UCCUcgacggggcggcgCCGCCGCGcGCc -3'
miRNA:   3'- -UCGUauCCCGuAGGG-------------GGCGGCGCcCG- -5'
21373 5' -63.1 NC_004812.1 + 49200 0.66 0.586069
Target:  5'- uGCAgcuGGGCAUgCUCaucCCGgGGGCg -3'
miRNA:   3'- uCGUau-CCCGUAgGGGgc-GGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 27896 0.66 0.565763
Target:  5'- gGGCccGGGGCGagCCCgGUCGgggagacCGGGCg -3'
miRNA:   3'- -UCGuaUCCCGUagGGGgCGGC-------GCCCG- -5'
21373 5' -63.1 NC_004812.1 + 15488 0.66 0.5648
Target:  5'- cGCGUGu-GCcucuucuaccaCCCCCGCCGCGGGg -3'
miRNA:   3'- uCGUAUccCGua---------GGGGGCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 74370 0.66 0.576379
Target:  5'- gGGCGgcGGGGUcccgCCCgCGCCcguuugggcGCGGGCc -3'
miRNA:   3'- -UCGUa-UCCCGua--GGGgGCGG---------CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.