miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 117306 0.74 0.21774
Target:  5'- cGGCc-GGGGCcgagCCCCCGCCGCgcccccggaccccGGGCc -3'
miRNA:   3'- -UCGuaUCCCGua--GGGGGCGGCG-------------CCCG- -5'
21373 5' -63.1 NC_004812.1 + 73533 0.75 0.180492
Target:  5'- uGGCcgGGGGCGggCCCgcagCGaCCGCGGGCa -3'
miRNA:   3'- -UCGuaUCCCGUa-GGGg---GC-GGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 45263 0.75 0.189352
Target:  5'- gAGC-UGGGGgG-CCCgcggggucggcgCCGCCGCGGGCa -3'
miRNA:   3'- -UCGuAUCCCgUaGGG------------GGCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 5366 0.74 0.193923
Target:  5'- cGGCAgacucGGGC-UCUCCCGCgGCGGGa -3'
miRNA:   3'- -UCGUau---CCCGuAGGGGGCGgCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 16749 0.74 0.198591
Target:  5'- cGC--AGGGCG-CCCCggggGCCGCGGGCc -3'
miRNA:   3'- uCGuaUCCCGUaGGGGg---CGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 138148 0.74 0.198591
Target:  5'- gGGCGcGGGGCcgcgccCCCCCGCCGCGccaccggacgcGGCc -3'
miRNA:   3'- -UCGUaUCCCGua----GGGGGCGGCGC-----------CCG- -5'
21373 5' -63.1 NC_004812.1 + 71945 0.74 0.203356
Target:  5'- cGGCGcGGGGCggCCCUgccgcgacgcgCGCCGCGGGa -3'
miRNA:   3'- -UCGUaUCCCGuaGGGG-----------GCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 121021 0.74 0.203356
Target:  5'- gGGCcgGGGGCGcUCCCCuCGgCGCcGGCg -3'
miRNA:   3'- -UCGuaUCCCGU-AGGGG-GCgGCGcCCG- -5'
21373 5' -63.1 NC_004812.1 + 8246 0.74 0.208221
Target:  5'- gGGCcgGGGGuCcgCCCCCgggggcGCCGgGGGCc -3'
miRNA:   3'- -UCGuaUCCC-GuaGGGGG------CGGCgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1222 0.75 0.172002
Target:  5'- cGGCGccgcgGGGGCuccUCCCCGCC-CGGGCg -3'
miRNA:   3'- -UCGUa----UCCCGua-GGGGGCGGcGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 34662 0.75 0.167892
Target:  5'- cGGCGccAGGGCcagcgcGUCCCCCaGCUGCGaGGCg -3'
miRNA:   3'- -UCGUa-UCCCG------UAGGGGG-CGGCGC-CCG- -5'
21373 5' -63.1 NC_004812.1 + 6347 0.75 0.167892
Target:  5'- cAGCAgGGGGCGgcaggcgcgCCgCCCGCCagggacGCGGGCa -3'
miRNA:   3'- -UCGUaUCCCGUa--------GG-GGGCGG------CGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 147910 0.79 0.097339
Target:  5'- gGGCGcggAGGGCGUCCCgCCGUCGCaGGaGCg -3'
miRNA:   3'- -UCGUa--UCCCGUAGGG-GGCGGCG-CC-CG- -5'
21373 5' -63.1 NC_004812.1 + 148436 0.78 0.104981
Target:  5'- gAGCGUGGGGUcgcggugaGUCCCUCGcCCGCucgGGGCg -3'
miRNA:   3'- -UCGUAUCCCG--------UAGGGGGC-GGCG---CCCG- -5'
21373 5' -63.1 NC_004812.1 + 77175 0.77 0.125055
Target:  5'- cGCGgcGGcGCcgUCCCCGCCGCcGGGCu -3'
miRNA:   3'- uCGUauCC-CGuaGGGGGCGGCG-CCCG- -5'
21373 5' -63.1 NC_004812.1 + 106968 0.77 0.138071
Target:  5'- cGCGUaccccaGGGGCGccUCCCCCucccgccCCGCGGGCg -3'
miRNA:   3'- uCGUA------UCCCGU--AGGGGGc------GGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 54746 0.77 0.138071
Target:  5'- cGGCGcGGGGCcgcAUCCCCgCgGCgCGCGGGCg -3'
miRNA:   3'- -UCGUaUCCCG---UAGGGG-G-CG-GCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 50020 0.77 0.141514
Target:  5'- uGGCGgcGGcGC-UCCCCC-CCGCGGGCc -3'
miRNA:   3'- -UCGUauCC-CGuAGGGGGcGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 4194 0.76 0.148638
Target:  5'- cGCcgAGGGCG-CCCCCGCgGCGcccGGCc -3'
miRNA:   3'- uCGuaUCCCGUaGGGGGCGgCGC---CCG- -5'
21373 5' -63.1 NC_004812.1 + 126105 0.76 0.162681
Target:  5'- cGGCcccGGGCGUCCCCUcccccgcgccgcgaGCaCGCGGGCu -3'
miRNA:   3'- -UCGuauCCCGUAGGGGG--------------CG-GCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.