miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21373 5' -63.1 NC_004812.1 + 61 0.68 0.464376
Target:  5'- cGCGUuuGGGCGggCUCCCGg-GCGGGCu -3'
miRNA:   3'- uCGUAu-CCCGUa-GGGGGCggCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 258 0.66 0.583159
Target:  5'- cGCGggaggaggGGGGgGUCUCCCGCgCGCGcuccgccgccguccGGCc -3'
miRNA:   3'- uCGUa-------UCCCgUAGGGGGCG-GCGC--------------CCG- -5'
21373 5' -63.1 NC_004812.1 + 517 0.68 0.455531
Target:  5'- cGCGgccGGGGCGggCCCgCgCGCC-CGGGCc -3'
miRNA:   3'- uCGUa--UCCCGUa-GGG-G-GCGGcGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 698 0.7 0.349689
Target:  5'- gGGCGcgcGGGCccgCCCCgGCCGCGgcGGCc -3'
miRNA:   3'- -UCGUau-CCCGua-GGGGgCGGCGC--CCG- -5'
21373 5' -63.1 NC_004812.1 + 740 0.66 0.615297
Target:  5'- cGGCGggggugGGGGCGgcgcgacccucUUCCCCGUCugaGGGCc -3'
miRNA:   3'- -UCGUa-----UCCCGU-----------AGGGGGCGGcg-CCCG- -5'
21373 5' -63.1 NC_004812.1 + 786 0.7 0.380339
Target:  5'- cGCGggagauGGGCcgccgCCCCCGCCGCcgcccGGCc -3'
miRNA:   3'- uCGUau----CCCGua---GGGGGCGGCGc----CCG- -5'
21373 5' -63.1 NC_004812.1 + 1012 0.66 0.59579
Target:  5'- cGGCc-GGGGCcgcgCCCCCGCga-GGGCc -3'
miRNA:   3'- -UCGuaUCCCGua--GGGGGCGgcgCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1222 0.75 0.172002
Target:  5'- cGGCGccgcgGGGGCuccUCCCCGCC-CGGGCg -3'
miRNA:   3'- -UCGUa----UCCCGua-GGGGGCGGcGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1252 0.71 0.307096
Target:  5'- cGGCGccGcGGCcgcccguugGUCCgCCgGCCGCGGGCg -3'
miRNA:   3'- -UCGUauC-CCG---------UAGG-GGgCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1301 0.7 0.37251
Target:  5'- gGGCGguccgAGGGCggUCCgCGggcgguCCGCGGGCg -3'
miRNA:   3'- -UCGUa----UCCCGuaGGGgGC------GGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1523 0.67 0.528583
Target:  5'- cGCGcgAGGGCAUgCCgCCGCCGCc--- -3'
miRNA:   3'- uCGUa-UCCCGUAgGG-GGCGGCGcccg -5'
21373 5' -63.1 NC_004812.1 + 1807 0.69 0.420254
Target:  5'- cAGCAUGGcGGaCGUCggggccgCCCCGUCGgGGGa -3'
miRNA:   3'- -UCGUAUC-CC-GUAG-------GGGGCGGCgCCCg -5'
21373 5' -63.1 NC_004812.1 + 1864 0.66 0.566726
Target:  5'- cGCcgGGGGCcUCCaUUgGCC-CGGGCg -3'
miRNA:   3'- uCGuaUCCCGuAGG-GGgCGGcGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1872 1.11 0.000489
Target:  5'- cAGCAUAGGGCAUCCCCCGCCGCGGGCg -3'
miRNA:   3'- -UCGUAUCCCGUAGGGGGCGGCGCCCG- -5'
21373 5' -63.1 NC_004812.1 + 1933 0.7 0.37251
Target:  5'- cGGCc-GGGGCGcUCCgCCCGUCGgGGGg -3'
miRNA:   3'- -UCGuaUCCCGU-AGG-GGGCGGCgCCCg -5'
21373 5' -63.1 NC_004812.1 + 2015 0.67 0.519191
Target:  5'- cGCucGGGGCG-CCgaCGCCGgCGGGCc -3'
miRNA:   3'- uCGuaUCCCGUaGGggGCGGC-GCCCG- -5'
21373 5' -63.1 NC_004812.1 + 2342 0.69 0.411903
Target:  5'- cGCGgaggacggGGGGCGcgUCCCCGCCGgagagaggcgggaCGGGUg -3'
miRNA:   3'- uCGUa-------UCCCGUa-GGGGGCGGC-------------GCCCG- -5'
21373 5' -63.1 NC_004812.1 + 3250 0.68 0.482328
Target:  5'- cGCcaGGGGCGcccgcgCCCCCGCCGCccgaGGa -3'
miRNA:   3'- uCGuaUCCCGUa-----GGGGGCGGCGc---CCg -5'
21373 5' -63.1 NC_004812.1 + 3434 0.68 0.473309
Target:  5'- cGGCAcgcGGCG-CCagCCGCCGCGGGg -3'
miRNA:   3'- -UCGUaucCCGUaGGg-GGCGGCGCCCg -5'
21373 5' -63.1 NC_004812.1 + 3964 0.69 0.421095
Target:  5'- aGGCcc--GGCGccCCCCCGCCGCgcgccggccGGGCa -3'
miRNA:   3'- -UCGuaucCCGUa-GGGGGCGGCG---------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.